Detailed information on CNT30678319


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 6e-130

BLAST vs NONCODE:
NONBNAT001751, E-value = 2e-145

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618377Setaria viridisSesamum indicum62.87103.4984.72386forward
CNT30629525Setaria viridisVigna unguiculata62.8789.7787.05386forward
CNT30440472Setaria viridisAegilops tauschii53.5855.2992.4329forward
CNT30608730Setaria viridisGossypium raimondii73.297585.56450forward
CNT30624959Setaria viridisDaucus carota54.498.2485.33334forward

Expression of CNT30678319

Peptides detected in this lncRNA

>peptide 1 (70 aa)
RTAKRPRGGYSENVSTTMGLVGTIFTIPASPFFRNLGSFSSSLPDRLSILVTSSANLTAMCEVWQSSTGA*

>peptide 2 (61 aa)
TNSKATKRRVLRECLHNHGLGGNHLHHTSITVLQELGLLLELLARSSVNLGNKLGKLDSNV*

>peptide 3 (72 aa)
MVHLNRLHLSGQAAGTKGDKHTRLDDTSLYTTNRHSSNTTNLVHILKGETQGLVRRPLWLIDQVKSLKHVGPL

>peptide 4 (51 aa)
HEQQSDQEEGTQRMSPQPWAWWEPSSPYQHHRSSGTWAPSRAPCQIVCQSW*

>peptide 5 (96 aa)
MMMTWEVKLAASLAGSSLELEATYPRLRSFTATFFTLKPTLSPGRASWSASWCISTDFTSVVRPLGPKVTSIPGLMTPVSTRPTGTVPIPPILYTS*

Sequence

>CNT30678319
CACGAACAGCAAAGCGACCAAGAGGAGGGTACTCAGAGAATGTCTCCACAACCATGGGCTTGGTGGGAACCATCTTCACCATACCAGCATCACCGTTCTT
CAGGAACTTGGGCTCCTTCTCGAGCTCCTTGCCAGATCGTCTGTCAATCTTGGTAACAAGCTCGGCAAACTTGACAGCAATGTGTGAGGTGTGGCAGTCC
AGCACTGGGGCGTAGCCATTGCCGATCTGGCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGTTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGT
TGGAGGCCACGTACCCACGCTTGAGATCCTTCACAGCAACGTTCTTCACGTTGAAGCCAACATTGTCACCGGGAAGGGCCTCCTGGAGCGCCTCATGGTG
CATCTCAACAGACTTCACCTCAGTGGTCAGGCCGCTGGGACCAAAGGTGACAAGCATACCAGGCTTGATGACACCAGTCTCTACACGACCAACAGGCACA
GTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCCGAAGGCCTCTTTGGCTCATTGATCAAGTCAAGAGCCTCAAGCA
TGTTGGGCCCTTGT