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Detailed information on CNT30678279


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000578, E-value = 3e-101

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201083Setaria viridisPisum sativum40.4416.2587.32347forward
CNT30194485Setaria viridisSecale cereale40.7938.1796350forward
CNT30303870Setaria viridisTriticum aestivum40.7938.6795.71350forward
CNT30225281Setaria viridisHordeum vulgare25.9966.5794.17223forward
CNT30565170Setaria viridisActinidia chinensis40.0930.1288.37344forward
CNT3089355Setaria viridisVigna radiata29.642.6286.22254forward
CNT30539441Setaria viridisBrassica napus67.2511.8185.62577forward
CNT30239038Setaria viridisBrassica oleracea40.7928.0787.43350forward
CNT30554212Setaria viridisOryza glaberrima40.799.2895.43350forward
CNT30146680Setaria viridisMedicago truncatula30.4220.8386.97261forward
CNT30444216Setaria viridisAegilops tauschii47.5580.7995.83408forward
CNT30257373Setaria viridisAvena sativa27.9736.1497.5240forward
CNT3059817Setaria viridisArabidopsis lyrata58.1686.4885.57499forward
CNT302912Setaria viridisZea mays40.7943.798.57350forward
CNT30682029Setaria viridisTriticum urartu40.7933.1895.71350forward
CNT30477828Setaria viridisArabidopsis halleri56.0694.586.9481forward
CNT30595572Setaria viridisOryza meridionalis21.121.1294.48181forward
CNT30355674Setaria viridisLactuca sativa40.2146.7586.96345forward
CNT3058691Setaria viridisAmborella trichopoda27.1652.1385.41233forward
CNT30121217Setaria viridisCitrus clementina33.5732.1186.81288forward
CNT30100001Setaria viridisOryza rufipogon23.6678.6898.03203forward
CNT30578317Setaria viridisOryza barthii56.64100.4193.21486forward

Expression of CNT30678279

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPLNFTSFCLCFINCFSTKDKTVSPAHKWL*

>peptide 2 (38 aa)
PSLRACTQASKATRLAAAPVLSEKDTARTIFFNKIIAQ*

Sequence

>CNT30678279
CCCTTCGTTACGGGCTTGTACACAGGCTTCTAAAGCCACACGATTAGCTGCTGCACCAGTCCTGAGTGAAAAAGATACCGCGAGAACGATCTTTTTCAAT
AAAATCATCGCGCAATAAATCAACAAAACCTAAAGTTATTTCGCGTTCCCCTTCTAACTTACCTACTACTGTACCGGAGTGGATATGATCTCCCCCCGAC
ATACGCAATGCTTTAGCTAATACACGGAAATGCATACCATGATTTTTCTGTCTATCAATAACTGCATGCATTGCTCGGTGAATGTGAAGAAGTAGTCATG
CATTACAATAGGAACCCCTAATTCCCTTGCAAATGCAGCTCTCTTAATCATTTCTTCGCATGTACCTGCAGTCGCATTCAAGTAATGCCCCTTAATTTCA
CCAGTTTCTGCTTGTGCTTTATAAATTGCTTCAGCACAAAAGACAAAACGGTCTCTCCAGCGCATAAATGGTTGTGAGTTTACGTTTTCATCATCTTTGG
TAAAATCAAGTCCACCGCGTAGACACTCATAACACGCTCTACCGTAATTTTTTGCGGATAATCCCAATTTTGGTTTAATAGTACATCCCAATAAAGGACG
ACCATACTTGTTCAACTTATCCCTTTCAACTTGGATACCCTATATAACAGATATATTGATCTGCCTCCCCAGGAACGGGCTCGATGTGATAGCATCGTCC
TTTGTAACGATCAAGACTGGTAAGTCCATCAGTCCAAACAGTTGTCCATGTACCAGTAGAAGATTCCGCAGCTACTGCAGCCCCTGCTTCTTCAGGCGGA
ACCCCGGGCTGAGGAGTTACTCGGAATGCTGCCAAGATATCAGTATCCTTGGTTTCGT