Detailed information on CNT30678205


BLAST search results

BLAST vs Swiss-Prot:
sp|P49036|SUS2_MAIZE, E-value = 2e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30713351Setaria viridisMalus domestica golden24.2314.2587.363forward
CNT30361762Setaria viridisSorghum bicolor40.7732.3295.28106forward

Expression of CNT30678205

Peptides detected in this lncRNA

>peptide 1 (33 aa)
ARKHPGCRKCSGRAHRCGHGSSGQRSSGCARSG*

>peptide 2 (55 aa)
LHESTLGVANVAVELTVADTVHLGRDPADVPVQVNQLLQPLVPAVQLNQTSQPLV*

>peptide 3 (30 aa)
MCPFRLTNSCSRLFRPYSSTRPVNLLCDSV*

Sequence

>CNT30678205
CTGCACGAAAGCACCCTGGGTGTCGCAAATGTAGCGGTAGAGCTCACCGTTGCGGACACGGTTCATCTGGGCAGAGATCCAGCGGATGTGCCCGTTCAGG
TTAACCAACTCCTGCAGCCGCTTGTTCCGGCCGTACAGCTCAACCAGACCAGTCAACCTCTTGTGTGACTCGGTGTAAGGGAAGTAGATGGACATGTCCG
CACCAGGTGAGACAATGTTGAACTTCGGGTCAAACACATCAATACCGTGGACAACACGGT