Detailed information on CNT30678190


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41607|SUS2_TULGE, E-value = 5e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019911Setaria viridisCitrullus lanatus44.1419.8885.16128forward

Expression of CNT30678190

Peptides detected in this lncRNA

>peptide 1 (65 aa)
TRRSGSSASPSRASRYLAPVAGVLLALLKEVHKQRRGLVALVRVNVVAGHAELLNLRVEGGQPLV*

>peptide 2 (46 aa)
HAGQGHQPLRVELPGILLQWLESSLHFSKKSTSSAEALSPWYGSMW*

Sequence

>CNT30678190
ACACGCCGGTCAGGGTCATCAGCCTCTCCGAGTAGAGCTTCCAGGTATCTTGCTCCAGTGGCTGGAGTCCTCCTTGCACTTCTCAAAGAAGTCCACAAGC
AGCGCCGAGGCCTTGTCGCCCTGGTACGGGTCAATGTGGTAGCCGGACACGCCGAGCTCCTCAATCTCAGGGTGGAGGGAGGTCAGCCTCTTGTGTGACT
CGGTGTAAGGGAAGTAGATGGACATGTCCGCACCAGGTGAGACAATGTTGAACTTCGGGTCAAACACATCAATACCGTGGACAACACGGT