Detailed information on CNT30678154


BLAST search results

BLAST vs Swiss-Prot:
sp|P37832|TBB7_ORYSJ, E-value = 1e-87

BLAST vs NONCODE:
NONBNAT004015, E-value = 2e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3092760Setaria viridisSolanum tuberosum67.5959.6883.54413forward
CNT30586804Setaria viridisMusa acuminata64.6551.1788.61395forward
CNT30511260Setaria viridisSolanum lycopersicum50.0875.9383.66306forward
CNT301973Setaria viridisZea mays29.9576.5792.35183forward
CNT3041960Setaria viridisChlamydomonas reinhardtii25.245.1689.61154forward
CNT30369370Setaria viridisOryza glumipatula46.4842.8492.96284forward
CNT3036150Setaria viridisCucumis melo21.9339.7683.58134forward
CNT30150001Setaria viridisBrachypodium distachyon18.8236.3989.57115forward
CNT30116105Setaria viridisOryza nivara28.4823.5887.93174forward

Expression of CNT30678154

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAGVGGAHHVLGIPHLLSQLRDGEGTVLL*

>peptide 2 (72 aa)
MLLSASVNSISSMPSPVYQCKKALRLNMAVNCSLTLRNISWMEEEFLFWTLSICSSTSLVLIFPRNMAEAVR*

>peptide 3 (69 aa)
YVINPSCKSHEKHRRQTQFTGTQPGRRRPLIAIRPQLPLPPHPRTPRQRWHPGTAGTLQPGRSCCSQPR*

Sequence

>CNT30678154
TACGTGATCAATCCATCATGCAAAAGCCACGAGAAGCATAGAAGACAAACTCAATTCACAGGGACACAACCTGGCCGGCGACGGCCGCTCATCGCTATTC
GGCCACAGCTTCCTCTTCCTCCTCATCCTCGTACTCCTCGTCAGCGGTGGCATCCTGGTACTGCTGGTACTCTGCAACCAGGTCGTTCATGTTGCTCTCA
GCCTCGGTGAACTCCATCTCGTCCATGCCCTCACCGGTGTACCAGTGCAAGAAGGCCTTGCGCCTGAACATGGCGGTGAACTGCTCGCTCACCCTGCGGA
ACATCTCCTGGATGGAGGAAGAGTTCTTGTTCTGGACGTTGAGCATCTGCTCGTCCACCTCCTTGGTGCTCATCTTCCCGCGGAACATGGCTGAGGCCGT
GAGGTAGCGGCCATGGCGGGGGTCGGCGGCGCACATCATGTTCTTGGCATCCCACATCTGCTGAGTCAGCTCAGGGACGGTGAGGGCACGGTACTGCTGT
GATCCACGTGAGGTCAGCGGCGCAAAGCCAACCATGAAGAAATGGAGACGAGGGAACGGGATGAGGACTGATTTGAAATGGTGCTTTATGCTGTTGGCGT
GGGGTTCGTTC