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Detailed information on CNT30678135


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XQE1|RR12_SOLNI, E-value = 1e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30300194Setaria viridisTriticum aestivum89.6540.3599.06849forward
CNT3018187Setaria viridisZea mays38.33100.2898.35363forward

Expression of CNT30678135

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRYLTPGKSLTLPPLTNTTECSCKLWQSWVFWG*

>peptide 2 (41 aa)
RLTTMLTNRLRKIGSDFAVLFSAVPRRDMSVKEVQESVFFL*

>peptide 3 (33 aa)
MAELGFLGLIVEKSTDKSSLLSLYRTVHEIFTSY

Sequence

>CNT30678135
ACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCGGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAG
GTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAAACGAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAA
AGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCA
CTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTG
TAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAG
GGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGCCTGCT
CCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAG
AATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTA
ACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCATC
CTTACTGTCCCTCTACAGAACCGTACATGAGATTTTCACCTCATACG