Detailed information on CNT30678101


BLAST search results

BLAST vs Swiss-Prot:
sp|P56647|RBL_SETIT, E-value = 3e-37

BLAST vs NONCODE:
NONORUT002429, E-value = 5e-92

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30629265Setaria viridisVigna unguiculata65.9120.4989.22232forward
CNT30196331Setaria viridisPisum sativum53.1212.689.84187forward
CNT30226496Setaria viridisHordeum vulgare32.955093.1116forward
CNT30435662Setaria viridisAegilops tauschii42.0546.3996.62148forward
CNT30257651Setaria viridisAvena sativa65.9141.2193.53232forward
CNT30681897Setaria viridisTriticum urartu65.9124.6393.53232forward
CNT30480921Setaria viridisChara braunii39.7718.4285.71140forward
CNT30434475Setaria viridisPapaver somniferum39.7736.4690.71140forward
CNT30323704Setaria viridisAsparagus officinalis31.2537.0490110forward

Expression of CNT30678101

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDKLYNRYIDLPPQERARCDSIVLCNDQDW*

>peptide 2 (40 aa)
ACTQASKATRLAAAPGAFPQGCPKVPPPNCNTESSPKISV*

Sequence

>CNT30678101
GGGCTTGTACACAGGCTTCTAAAGCCACACGATTAGCTGCTGCACCAGGTGCATTTCCCCAAGGATGTCCTAAAGTTCCTCCACCAAATTGTAATACAGA
ATCGTCTCCAAAGATTTCGGTCTAATGGATAAGCTATATAACAGATATATTGATCTGCCTCCCCAGGAACGGGCTCGATGTGATAGCATCGTCCTTTGTA
ACGATCAAGACTGGTAAGTCCATCAGTCCAAACAGTTGTCCATGTACCAGTAGAAGATTCCGCAGCTACTGCAGCCCCTGCTTCTTCAGGCGGAACCCCG
GGCTGAGGAGTTACTCGGAATGCTGCCAAGATATCAGTATCCTTGGTTTCGT