Detailed information on CNT30678075


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549654Setaria viridisIpomoea triloba18.7126.6783.3396forward
CNT30712567Setaria viridisGlycine max15.0121.6988.3177forward
CNT30592382Setaria viridisMusa acuminata38.0132.7787.18195forward
CNT30552975Setaria viridisOryza glaberrima27.123.9795.68139forward
CNT30247019Setaria viridisAvena sativa38.2115.9585.71196forward
CNT30137220Setaria viridisLolium perenne52.2418.2687.31268forward
CNT30154709Setaria viridisPrunus persica15.425.0887.3479forward
CNT30331222Setaria viridisDioscorea rotundata36.2623.6983.87186forward
CNT30575580Setaria viridisOryza barthii21.2532.5494.5109forward
CNT30579360Setaria viridisEchinochloa crusgalli25.5421.5896.95131forward
CNT30113801Setaria viridisFicus carica22.4227.8588.7115forward

Expression of CNT30678075

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MTPARPKVITISRTRASHTEMPVRPKVPVGSPPVEKRRRKHATVEPSSWAIQYRMPRKRVMLPPTKAPKAWAIAAAIRPVGVEPP

>peptide 2 (37 aa)
DATDRSKPCERAQRRSSVHDYTVMMMGGDAKHAMREN*

>peptide 3 (51 aa)
MQSTRCEKTNQTAASTDQTDGTGRCARRRRRRLPKPQLSSRWWVAARGCGR*

Sequence

>CNT30678075
TGATGCGACTGATCGAAGCAAACCATGCGAGCGGGCGCAGCGGCGGAGTTCGGTTCATGACTACACGGTGATGATGATGGGCGGCGATGCAAAGCACGCG
ATGCGAGAAAACTAATCAAACGGCGGCGAGCACTGATCAAACGGACGGAACCGGCCGCTGCGCGCGACGTCGTCGACGGCGGCTACCGAAGCCTCAGCTT
AGTAGTCGGTGGTGGGTAGCTGCTCGTGGGTGTGGGAGATGAAGAGCACCTCGTAGATGACGCCGGCGAGGCCGAAGGTCATCACGATCTCGAGGACCAG
GGCCTCCCACACGGAGATGCCGGTCAGGCCGAAGGTGCCGGTGGGGAGTCCGCCGGTGGAGAAGCGGAGGAGGAAGCACGCCACGGTGGAGCCCAGCAGC
TGGGCGATCCAGTACAGGATGCCGCGGAAGAGGGTGATGTTGCCGCCGACGAAGGCGCCGAAGGCGTGGGCAATAGCCGCGGCGATCAGGCCCGTGGGGG
TCGAGCCGCCGGG