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Detailed information on CNT30678068


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RU61|ATPH_ATRBE, E-value = 1e-19

BLAST vs NONCODE:
NONORUT001152, E-value = 8e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Setaria viridisOryza sativa57.616.1488.39913forward
CNT30268703Setaria viridisChenopodium quinoa16.3423.1591.51259forward
CNT30506790Setaria viridisNicotiana attenuata10.7928.1290.06171reverse complement
CNT30291829Setaria viridisTriticum aestivum20.388.1995.98323forward
CNT30553466Setaria viridisOryza glaberrima8.4525.6798.51134forward
CNT30656987Setaria viridisTriticum dicoccoides20.3825.0295.98323forward
CNT3017974Setaria viridisZea mays63.6637.2694.251009forward
CNT30596381Setaria viridisOryza meridionalis7.1938.7884.21114forward
CNT30103672Setaria viridisOryza rufipogon23.642.8488.77374forward
CNT30604201Setaria viridisOryza punctata6.1847.885.7198reverse complement

Expression of CNT30678068

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MQSFFNANRFNLIISFRLSLRSCLTCKKSPLLKCSQNS*

>peptide 2 (36 aa)
MGRKRTSVSSKLIMLKSALPGVPGVLSVPINTKFPE*

>peptide 3 (36 aa)
MILIILFLFLFNQSLFHSILFFYSLISLSSHFFPFI*

Sequence

>CNT30678068
ATATTTGTAATAATTTGGAAATGCGGGAAAAGAGGTGTTTTTTAAAGCACTTCTTTTTGCATATAAATATTCAATCTCACTAAAGAAAAATGTTTTAAGT
AAAACATTTTTTTTCTTTTTAAAAAAGAAATCGAAATTCTTTCGAAATCTAATGATTAGAAGAGCGGCGGATAATAAGGATCCGCACAAAAGAGTTGCAT
AGCTTAGCGATTATCTAATAAATCTTTTAACACTCCCTTTCCAAAAAAAATCAATACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATA
TCGGTATTAAGCCCGAAACTCCCAGCGAATGGCCTGTGAGCTAAAAAAACGAAAGAATAGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGA
ACAAAGAAGAAAGTTTTTCGATCACTTACTTCGCTCGCCCTTTTTTGATCGGTTTTTTTAATGCAATCTTTTTTTAATGCAAATAGATTTAATCTAATAA
TTTCTTTTAGATTAAGTCTTAGGTCTTGTTTGACCTGTAAAAAATCTCCTTTGTTGAAATGTTCCCAAAATTCCTAAAATAAAAGAAAAAGAGTTTCCAC
TGTCCTAAACTAAGAATGGGAAGGAAGAGGACGAGCGTATCCTCTAAATTGATCATGCTCAAATCAGCCCTTCCTGGGGTTCCTGGGGTATTGTCTGTCC
CGATAAATACAAAATTCCCGGAATAATATAATAAATAGGAGTAAAGTATTGATATACTTGGAATTACAGAAGCAAATCCCAATGTACGAAAAAAAAGAAA
AAAGTATCTAATCTAAAGGACTCTTTTTCTTTTTTAGGATTAAACAAAAGGGTTCGCAAATAAAAGCGCTAGTGCCACAACCAGTCCATAAATTGTTAAA
GCTTCCATAAAAGCTAGACTAAGCAATAAAGTACCTCGTATTTTACCTTCTGCTTCTGGCTGTCTCGCAATACCTTCTACAGCTTGTCCTGCAGCAGTAC
CTTGACCAACTCCGGGCCCAATAGAAGCAAGCCCTACGGCCAATCCAGCAGCAATAACGGAAGCAGCAGCAATTAGTGGATTCATGGTGAGTTCCTCGTG
TCAAAAAAAAAAAGAAATGGTTAAGGATACAATCAACCAAGAAATTATTACTTCTAACTTCTAAGCTCTATTGGGTAAAAGTAACTAATAAGTACAAATA
AATGATAATTGAAATCGTCCGAATTACTTCGAGATCTCGTTTTTAGTTTCTAATCATTAGAGGTTTGTGTAAATCCATATGATTCTCATTATTCTATTTC
TCTTTCTTTTCAACCAATCACTCTTTCATTCCATCCTTTTTTTTTACTCTTTGATATCCTTGAGTTCCCATTTTTTCCCCTTCATCTAACATAATAAAAG
ACGAAATATAGGAAGAACCCCTATTGAAATCGAACTAATTCAAATCCAATAGGAATCAAATCAAGATATACAATTGATAACAATATGCTGCATAGAATTA
GAATTAGATATGGAATCCAGTTCTATATAGAAGGGAATTCTACATATCGGATTAGATAATGAATCTAACTTAGGAATAAAAGCTC