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Detailed information on CNT30678052


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L389|YCF4_SACHY, E-value = 3e-78

BLAST vs NONCODE:
NONOSAT000331, E-value = 2e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30227829Setaria viridisAnanas comosus9.0324.8990.6117forward
CNT30369217Setaria viridisOryza glumipatula24.3848.8487.97316forward
CNT30149719Setaria viridisBrachypodium distachyon11.6566.2394.04151forward

Expression of CNT30678052

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MEEYYAIYLTWIKQIRSNFLLFSFVPSFR*

>peptide 2 (45 aa)
MHEFMLVAYICIHRRFSFVCRKSYIPYHIILLTQKNICIMILEIH*

>peptide 3 (37 aa)
MEVRISYSYQDNWKPQPLRILMNLEKEYSSGQLKLRE*

Sequence

>CNT30678052
TTTTTGATCTGTAAATTGAGTTGTTAATGAATCCGCTTCATTCGCCGACTCTATTTCATTCGCTGAATATATATGATATTTCTTTTCTTTGAAACACAAA
TTCTATAACAAGGTTTGAGACCTTGTGTTTGTATCTATTTATCTTTTTGTATACTAGTGGAATTTCATTGTATTGGGTTCTTTCTTAGATCTAAATGGAG
TGGAATAGAGAAATAAAAAAAAGGCCTTTCATATAAAAATGGAAGAATATTATGCCATATATCTCACTTGGATAAAACAAATTAGAAGCAATTTTCTCTT
ATTCTCGTTTGTTCCTTCCTTTAGATAAATACTCGAAAATCCCTTACAATTGCAAAAAATTGCAATTGGTACTCAAAATACTTCAATTGGTACACGCAAG
AAATAGGATACGACGAGGATAAAGACCCTCTTTAACCTGAATCCTAATTGATTGGATATCCCGCACAAGGAATCGAAGGAAGATGCGACGTTTTATTCCA
GGGAATCCCCAACGAAAAATGCACACTATTCCCTCTTTTCTATCGAATCGGTCATAACCACTGCCTACATTCCACAAAATAGTGCACCACAAATAGGAGC
TAATGAATAGGCCCGCGATTCCGTAGAAAGACATCACGACCCCCTGTGGAAAAAAAAGAATTTGTTGAGATGGAAGTACGGATATCATATTCTTACCAAG
ATAACTGGAAGCCCCAACCGCTAAGAATCCTAATGAACCTAGAAAAAGAATACAGTAGCGGTCAATTGAAATTGAGAGAATAAGCTAAATGATTTTGACT
TTACTTTTTTTGATTCTGAAATAACCTTCAGTAGCTAGTACTCCTGTGAAATAATTGGTTAGATACATTGACTTTCTATTCAAAAAGAATTCGTGGATCC
ACTTAAAAAAAACTCGCTATACTCGGCTACGCATATGCATGAATTTATGCTCGTAGCCTATATCTGCATCCATAGACGTTTTTCATTTGTGTGTAGAAAG
AGCTACATACCCTATCATATTATATTACTTACACAAAAAAATATCTGTATTATGATCCTGGAAATACATTAAGAAAATTGGGCCCCGTCGTTTCTAGACA
ATCTTATTTTTCTGCACATAAAGAAATAAGGAAGCCATTGCAATTGCTGGAAATACTAAGCCTACTAAAGGCACGAAAATAGAGGGTAAGTTAAAATCTG
TCATAGAATATGTGTCTCAATTCAAATTTACTATTTCTATCTATTCGAAATATATCTTAAGATTCTTATGATATAATTAAGTATATCTATTATAAG