« Back to Setaria viridis search


Detailed information on CNT30678049


BLAST search results

BLAST vs Swiss-Prot:
sp|P33629|TBA_PRUDU, E-value = 8e-81

BLAST vs NONCODE:
NONGMAT000220, E-value = 3e-60

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3024647Setaria viridisPopulus trichocarpa74.2485.1483.45441forward

Expression of CNT30678049

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MASLSSRTATSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFLP*

Sequence

>CNT30678049
CCACTCGGGCAGATCATAGGATAACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCCTCGTCTCCTTCCTCGCCCTC
GTCGAACTCAGCGCCGACCTCCTCGTAGTCCTTCTCGAGCGCAGCCAGATGTCATAGATGGCCTCATTGTCAAGCAGAACAGCAACATCAGTGTGCTCGA
GGAGGGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACCACTGAGGTGGAGACCTGGGGAGATGGGTACACAGTGAACCCGAGCTTGGACTTCTTGCC
ATAGTCAACAGACAGACGCTCAAGGAGGAGAGAACCAAGACCAGAGCCTGTTCCTCCACCAACAGCATTGAAGACAAGGAAGCCCTGGAGACCAGTGCAG
TTGTCGGCAAGCTTCCTGATGCGCTGCTCAGGGTGGAAGAGCTGGCGGTAAGTACCAGTCCTCACCTCATCAATCACAGTGGGCTCAAGGTCAACAAAAA
CAGCACGGGGCACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCTCCAACGGTCTTGTCGCCGGGCATCTG