Detailed information on CNT30678034


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298301Setaria viridisTriticum aestivum21.0919.4790.1281reverse complement
CNT3087688Setaria viridisVigna radiata23.4441.6788.8990forward
CNT30668197Setaria viridisTriticum dicoccoides23.9642.491.392forward

Expression of CNT30678034

Peptides detected in this lncRNA

>peptide 1 (54 aa)
NTSTIKHDQWQTQIQTKRTDSSYKTSFSQKSTNTQSKCQALEFGYISMVRIKNY*

>peptide 2 (45 aa)
TQARSSTINGRHKFKQKEQIQATKLHLAKSRPTLRANVRHWNLDT*

Sequence

>CNT30678034
AACACAAGCACGATCAAGCACGATCAATGGCAGACACAAATTCAAACAAAAAGAACAGATTCAAGCTACAAAACTTCATTTAGCCAAAAGTCGACCAACA
CTCAGAGCAAATGTCAGGCATTGGAATTTGGATACATAAGCATGGTCCGCATTAAGAACTACTAATAACACTGAAATTTGACGAGAGGTTTTAAGAACAG
TAGTAGACACCACAACTTCAGCATCCAGATAGGCTGTCCTTACCCTTCTTGTACTGAGTCACCTTGTGGAGAGTGTGCTTCCTGCACTCCTTGTTTTTGC
AGTAAGTCTTCTTGGTCTTCGGAACGGAGAGCTAGGGCTCCTGCAGCGTGCTCCCTATCCGGGCGAGAAGTTGCGGCGAGTGGC