CANTATAdb - search

Detailed information on CNT30677977

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000220, E-value = 1e-34

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30611949	Setaria viridis	Arabis alpina	22.39	34.1	88.98	118	forward
CNT30228	Setaria viridis	Zea mays	37.76	26.57	93.97	199	forward
CNT30619808	Setaria viridis	Cajanus cajan	32.83	29.08	84.97	173	forward
CNT30147962	Setaria viridis	Brachypodium distachyon	38.52	59.88	90.64	203	forward

Expression of CNT30677977

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MPHLNPVGHQSTNWMVRLVLMVETWGDGYTVNPSLDFLP*

>peptide 2 (45 aa)
CKRHTTTDNSSNRHTDTQQDKIGATRADHRITAAHRPDTAAGSIV*

Sequence

>CNT30677977
TTGTAAACGACATACGACGACAGATAACAGTTCAAACCGACACACCGACACACAACAAGATAAGATAGGAGCCACTCGGGCAGATCATAGGATAACCGCG
GCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCCTCGTCTCCTTCCTCGCCCTCGTCGAACTCAGCGCCGACCTCCTCGTAGT
CCTTCTCGAGCGCAGCCAGGTCACCGCCAGGCACCACGCTGGGGGGCTGGTAGTTGATGCCGCACTTGAACCCAGTGGGGCACCAGTCCACGAACTGGAT
GGTGCGCTTGGTCTTGATGGTGGAGACCTGGGGAGATGGGTACACAGTGAACCCGAGCTTGGACTTCTTGCCATAGTCAACAGACAGACGCTCAAGGAGG
AGAGAACCAAGACCAGAGCCTGTTCCTCCACCAACAGCATTGAAGACAAGGAAGCCCTGGAGACCAGTGCAGTTGTCGGCAAGCTTCCTGATGCGGTCAA
GGCACAGGTCAACAATCTCCTTGCCAA