Detailed information on CNT30677963


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53RB0|LOX4_ORYSJ, E-value = 5e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30394048Setaria viridisTriticum turgidum20.185.6390.9144forward
CNT30135896Setaria viridisLolium perenne73.8535.0884.47161forward
CNT30361620Setaria viridisSorghum bicolor44.9519.6889.898forward
CNT30100848Setaria viridisOryza rufipogon29.8217.287.6965forward

Expression of CNT30677963

Peptides detected in this lncRNA

>peptide 1 (62 aa)
RHLHGPGPVLVRRVVVHLHDALLDLHQPAAEPLERVQRLGVRRPALRLVALAEVWHEMIMVV*

>peptide 2 (33 aa)
TASSRARSGSCSPGRCSSSRCASRSPPAGCRTS*

>peptide 3 (57 aa)
GIFTGPVRFLFAGSLFIFTMRFSISTSRLPNLLNASSALASDVQRSGSSRWPRYGMK*

Sequence

>CNT30677963
ACGGCATCTTCACGGGCCCGGTCCGGTTCTTGTTCGCCGGGTCGTTGTTCATCTTCACGATGCGCTTCTCGATCTCCACCAGCCGGCTGCCGAACCTCTT
GAACGCGTCCAGCGCCTTGGCGTCCGACGTCCAGCGCTCCGGCTCGTCGCGCTGGCCGAGGTATGGCATGAAATGATCATGGTGGTCTAGGATGAAGAGC
TTGTTCTTCTTCAATGCC