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Detailed information on CNT30677956


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3056176Setaria viridisAmborella trichopoda42.65.5180.86256forward

Expression of CNT30677956

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MTYVVLKGYLYDPIDCIRPAVAIERGKYTEKTVLFNFDYLYISSFLFLDIYFYILVLVS

>peptide 2 (40 aa)
MDPCVYIPRFCSWINENAQELYLPLPFYESLPFCVQRLHQ*

>peptide 3 (57 aa)
MRKSSICLCHSMSRFLFAYSVCINRELFPLYESILFHSNFFPKLPKKNPELDPKLTG*

>peptide 4 (39 aa)
MISVFSFFSFLFVSKKISSDSPSIDSFPIEMYGSMCLHT*

Sequence

>CNT30677956
GGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTATTTGTTTCGAAAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATC
GAGATGTATGGATCCATGTGTCTACATACCTAGATTCTGTTCATGGATTAACGAAAATGCGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTT
CCTTTTTGCGTACAGCGTTTGCATCAATAGAGAACTTTTTCCTCTGTATGAATCGATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAAT
CCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATGCGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTG
GTGAGTCGTCCGAGATCCTTTCGATGACCTATGTTGTCTTGAAGGGATATCTATATGATCCGATCGATTGCATAAGACCCGCAGTAGCAATAGAACGGGG
AAAGTATACAGAAAAGACAGTTCTTTTCAATTTCGATTATCTATATATTAGTTCGTTTCTATTTCTAGATATCTATTTCTATATATTAGTATTAGTTAGT
A