Detailed information on CNT30677912


BLAST search results

BLAST vs Swiss-Prot:
sp|A4GYN8|RR12B_POPTR, E-value = 6e-47

BLAST vs NONCODE:
NONORUT004214, E-value = 1e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201818Setaria viridisPisum sativum20.1523.5394.14324forward
CNT30384007Setaria viridisTriticum turgidum25.546.9696.83410forward
CNT3018194Setaria viridisZea mays36.5100.1799.66587forward
CNT30355468Setaria viridisLactuca sativa43.3556.9991.97697forward
CNT30416238Setaria viridisPapaver somniferum46.6497.9193.6750forward

Expression of CNT30677912

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRFSPHTAPRSIISKGSFSSFESLRPSSTPSRRLTKTN*

>peptide 2 (35 aa)
MLTNRLRKIGSDFAVLFSAVPRRDMSVKEVFRIVC*

>peptide 3 (89 aa)
MIKGEDCSFTKHMRIKSRLIIRRNLSRYQSPCPSFFENQKDPFRVSISSFFEFPFLHFESGLFYLRLLFLALFFIYFISIFPSSSIPIL*

>peptide 4 (38 aa)
MTYVVLKGYLYDPIDCIRPAVAIERGKYTEKTVLFNFDY

>peptide 5 (31 aa)
MRYLTPGKSLTLPPLTNTTECSCKLWPIPGI*

Sequence

>CNT30677912
AAAAGATCACAATAAACTTTTGGTAAAAGTTTTGTCTTGGTAGGAATTTGTCGAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAG
GGGCTGGGGAAAGCTTGAACCCAAGTCCTACAGTGATGAATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTAATTTGATAAGCCAATGATT
TTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCGGTTCTTTTTTCTGCAGTACCTCGACG
TGACATGAGCGTGAAAGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAG
AGTTCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTT
CACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGC
GACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTA
TGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAG
TGGAAAAGTCGACAGATAAGTCATCCTTACTGTCCCTCTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGTTCAATTATTTCGAAGGGAT
CCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTC
CATTTATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCGGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTG
CCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTTTCGAGTTTCCATTTCTTCATTTTGAATCTGGGCTCTTCTATCTT
CGACTTCTTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAA
CTTTTTCCTCTGTATGAATCGATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTG
AGCTTATCCATGCGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCCTTTCGATGACCTATGT
TGTCTTGAAGGGATATCTATATGATCCGATCGATTGCATAAGACCCGCAGTAGCAATAGAACGGGGAAAGTATACAGAAAAGACAGTTCTTTTCAATTTC
GATTATCT