Detailed information on CNT30677865


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 4e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375418Setaria viridisArabidopsis thaliana20.4237.2989.7788forward
CNT30211318Setaria viridisHelianthus annuus26.2229.0581.42113forward
CNT3024855Setaria viridisPopulus trichocarpa25.2918.5785.32109forward

Expression of CNT30677865

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MADAAKTWSSPEAGGFEMDLCGRRFGDFLRD

Sequence

>CNT30677865
CTTCCAATTCTCCATTACAACCATAAACACCTATTAAGTTAACACCACAACGCAGCTAGACACAGGACAGAACCCAACACAGCAACTCCCCTAAATCCAT
CAGAAACCCTAGCTCGAGCCTGCAGGACGCGGACGGGGTCAAGGCTCAGCCGCCGAAGCCGTAGAGTGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACG
TCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCCGTGTAGGTAACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGAGTCTCCT
CGTAGATCAGGCCCTTACCTCCCTTGCCGCGGCCCGACATGGCTGATGCTGCGAAGACTTGGAGCTCGCCGGAAGCAGGAGGATTCGAAATGGATTTGTG
CGGACGAAGATTTGGTGATTTTCTGCGAGAT