Detailed information on CNT30677855


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30305412Setaria viridisTriticum aestivum12.721.8992.3165forward
CNT30588421Setaria viridisMusa acuminata20.937.9483.18107forward
CNT30662767Setaria viridisTriticum dicoccoides35.7487.9887.98183forward
CNT30445673Setaria viridisSaccharum spontaneum22.0742.3297.35113forward
CNT3067157Setaria viridisLeersia perrieri31.8435.2188.96163forward
CNT30361636Setaria viridisSorghum bicolor20.3128.2694.23104forward
CNT30584731Setaria viridisEchinochloa crusgalli32.0311.9782.93164reverse complement

Expression of CNT30677855

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVRYLSAYSISRYRRVSRLSRLDTYFQNPYTPVRVISLSE*

>peptide 2 (32 aa)
HDRLHTHTPCIPNYQINSKLAATPTSMEDLDS*

Sequence

>CNT30677855
CCATGACCGACTGCACACACACACCCCATGCATCCCCAACTACCAAATCAACTCAAAACTAGCAGCAACGCCCACATCAATGGAAGACCTTGATTCTTGA
TGCCCGCCTAGGAAAACCAAACTCTTCTTCTTTTGGCCTCAGAAATAAGGAAGGAACCCAGGAAAAGACACGACTTCAAGTGCTCCCTTCTTTCAGGCCC
CGGCCGCCGCATCACTTGCTGGAGGGCTCTCCCTCCACGGCCAACGGCACCGTGCTGGCCATGGTGCGGTACTTGAGCGCGTACAGCATCTCCAGGTACC
GCCGGGTCTCGCGCCTCTCCAGGTTAGACACGTACTTCCAGAACCCGTACACGCCGGTCAGGGTCATCAGCCTCTCCGAGTAGAGCTTCCAGGGTGGAGG
GAGGTCAGCCTCTTGTGTGACTCGGTGTAAGGGAAGTAGATGGACATGTCCGCACCAGGTGAGACAATGTTGAACTTCGGGTCAAACACATCAATACCGT
GGACAACACGGT