Detailed information on CNT3067785


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004331, E-value = 6e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690670Leersia perrieriOryza sativa13.9542.3382.46171forward
CNT30554733Leersia perrieriOryza glaberrima19.7421.5185.12242forward
CNT30370899Leersia perrieriOryza glumipatula9.2248.585.84113forward
CNT30110252Leersia perrieriOryza longistaminata13.9560.2183.63171forward
CNT30102231Leersia perrieriOryza rufipogon19.5847.1586.25240forward
CNT30115706Leersia perrieriOryza nivara9.2237.9286.73113forward
CNT30551244Leersia perrieriOryza brachyantha7.9929.1787.7698forward

Expression of CNT3067785

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MYLAVLYHYLHPSDDISTACDESARLVVFLGPS*

>peptide 2 (34 aa)
MKEIDHCPLRLRPSDAAAVPLNPFRRFPELAILH*

>peptide 3 (51 aa)
MLIYLTCVFHYYFMCCMLEFWFLIMLCTLLYFTIIYTLVMIFQLLAMKVRG*

>peptide 4 (59 aa)
DKRWQPLFHFSFSSKLLSLFFTLPTSFQIQDTQGTPHFSPQIAYFSPDDRMEFAVAAAC*

>peptide 5 (36 aa)
MHTLKTSGYLCVYGSHSKKNYMVVVLYTGWYNIRGCS

>peptide 6 (46 aa)
QEVATPLSFLLLLQASELVLHPSHFLPDPGHSGNTSFFSPNRLLQP*

Sequence

>CNT3067785
GACAAGAGGTGGCAACCCCTCTTTCATTTCTCCTTCTCCTCCAAGCTTCTGAGCTTGTTCTTCACCCTTCCCACTTCCTTCCAGATCCAGGACACTCAGG
GAACACCTCATTTTTCTCCCCAAATCGCCTACTTCAGCCCTGACGACCGAATGGAGTTCGCCGTCGCTGCCGCTTGTTGAGTCATCCTCTTCTCCATCTA
TTTTGCGTTCCCTGAACGGCTCATCGTGCCGTAGCTACTGTTAAAATTTGGCCCTTTTTCGTGCAGGCAATCTCTGGAAACGCGAAGTTTAATCTGAGCT
CCCGGAGTGCCGTCACGACGCCGCCGGAGCGCAGCCACCAGATCGGACCGGCGTTCCACCCACTGTAGACTACTTCGACAGGAGCCACTTCGCCACCGGT
ACCGCGCCGACTTCCTCTTCAAAAGGCCCCAAGAATCACCAACATCGGTGCAGCGATGAAGGAGATCGACCACTGTCCTCTTCGGCTCCGACCGAGCGAC
GCCGCGGCTGTTCCTCTGAATCCGTTTCGGAGATTTCCGGAGTTGGCGATCCTTCACTGAGGTTGAGTGCGACCGCAGCATACAGGGAAGGATTCGAGTG
TTGAGCTTCGCTTGTGTGTGGTCATTGCTCTCCCGAGGGCGGCGAGGGCAGTGAATGTTTTCTTTTTTTCAGCTTGGCTCTTGCCCGTTTGGTTTTCCCT
AGTGGGGTTTAGCGCCACCGGTTTTACTTTATGCTTATATACCTTACTTGTGTCTTCCACTACTATTTTATGTGTTGTATGTTAGAATTTTGGTTCCTAA
TAATGTTATGTACCTTGCTGTACTTTACCATTATTTACACCCTAGTGATGATATTTCAACTGCTTGCGATGAAAGTGCGAGGCTAGTCGTATTCCTGGGG
CCTAGCTAAGCATGAGTAACGTGTTTTGATCGCTTGGGATAATCGGGGATCGCGCTTTGGTTCGAGTCACTGGGGTATGCCTTGTTTTCTGGGCGCCGTC
TTCGCGTGGTTGACGGGCATATGATGGAGTTGACTGACAAGCGGTTTATGGTTATCCCCTGCGCTCACTATTCGGCATTCCGGTTATTATAACAGAAGGT
TGTCAACCGTGATCATGCACACATTAAAGACGAGCGGCTATTTATGCGTGTATGGATCCCACTCTAAGAAGAATTATATGGTGGTCGTGTTGTACACTGG
ATGGTATAATATTCGGGGGTGTTCAC