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Detailed information on CNT30677823


BLAST search results

BLAST vs Swiss-Prot:
sp|P25862|TBB1_AVESA, E-value = 9e-43

BLAST vs NONCODE:
NONZMAT001785, E-value = 3e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696010Setaria viridisOryza sativa28.1426.8186.4974forward
CNT30522590Setaria viridisSetaria italica36.885.810097forward
CNT30376989Setaria viridisArabidopsis thaliana47.5340.0685.6125forward
CNT30684516Setaria viridisTriticum urartu36.8836.8898.9797forward
CNT30721780Setaria viridisTriticum spelta35.7441.5990.4394forward
CNT30595970Setaria viridisOryza meridionalis28.1417.1786.4974forward

Expression of CNT30677823

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MPDPVPPPNEWQSQFSASLRTTSRTESMSSAPSV*

>peptide 2 (32 aa)
MAVAVLGLLADDVEDGVDELGALGVVSLGPVVA

Sequence

>CNT30677823
AGTTGGTGAACCGAAAGAGTAGCATTGTATGGCTCCACAACAGTATCTGAAACTTTTGGCGATGGGAAGACAGAGAAGGTCAACATCATCCTATCAGGGT
ACTCCTCCCTGATCTTAGAAATAAGAAGGGTGCCCATGCCAGATCCAGTGCCTCCTCCCAACGAATGGCAGTCGCAGTTCTCGGCCTCCTTGCGGACGAC
GTCGAGGACGGAGTCGATGAGCTCGGCGCCCTCGGTGTAGTGTCCCTTGGCCCAGTTGTTGCC