Detailed information on CNT30677790


BLAST search results

BLAST vs Swiss-Prot:
sp|P08437|H3_VOLCA, E-value = 2e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315797Setaria viridisCorylus avellana26.116.1986.92107forward
CNT30376827Setaria viridisArabidopsis thaliana19.5133.988.7580forward
CNT30267640Setaria viridisChenopodium quinoa25.1214.1983.5103forward
CNT30628401Setaria viridisVigna unguiculata19.7624.1186.4281forward
CNT30712448Setaria viridisGlycine max23.923.0682.6598forward
CNT3090157Setaria viridisSolanum tuberosum26.3416.7483.33108forward
CNT30221211Setaria viridisHordeum vulgare25.619.1296.19105forward
CNT30508643Setaria viridisSolanum lycopersicum26.8314.381.82110forward
CNT30447268Setaria viridisSaccharum spontaneum34.3936.1594.33141forward
CNT30361473Setaria viridisSorghum bicolor72.9355.5885.95299forward
CNT30154413Setaria viridisPrunus persica19.7620.9390.1281forward
CNT30418220Setaria viridisPapaver somniferum21.9520.9388.8990forward

Expression of CNT30677790

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSLGMMVTRLAWMAHRLVSSNRPTSLWKGSFLINSSVLFWYLRIS

>peptide 2 (51 aa)
MIHRTSPTQMSGTWPHIKPLLRHEILHFVTMIEGIKPSRHGSSWPAECPWA*

>peptide 3 (33 aa)
MDGAQVGVLKQTNKPLEGQLPDQQLSALLVLTDL

>peptide 4 (29 aa)
LDINERSATAQMSQTVNAAPTLDDLSIRP*

Sequence

>CNT30677790
ACTTGACATTAACGAACGATCAGCCACAGCACAAATGTCACAAACTGTCAACGCGGCACCAACATTAGACGATTTAAGTATTCGACCCTAGTAATAACAC
CAACAAGGTAGTAGCAAACAGCAGAAGAGAAACTTATGATCCACAGAACAAGCCCTACTCAGATGTCCGGAACATGGCCCCACATTAAGCCACTACTACG
ACACGAGATTCTTCATTTTGTCACAATGATTGAGGGGATTAAGCCCTCTCGCCACGGATCCTCCTGGCCAGCTGAATGTCCTTGGGCATGATGGTCACAC
GCTTAGCATGGATGGCGCACAGGTTGGTGTCCTCAAACAGACCAACAAGCCTCTGGAAGGGCAGCTTCCTGATCAACAGCTCAGTGCTCTTCTGGTACTT
ACGGATCTCA