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Detailed information on CNT30677693


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 7e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30684179Setaria viridisTriticum urartu37.0636.5291.7229forward
CNT30721351Setaria viridisTriticum spelta37.0634.5991.7229forward
CNT30106557Setaria viridisOryza longistaminata32.5293.9391.04201forward

Expression of CNT30677693

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRENTSTTLVELEIMHTARCTLARSPPGTTLGGW*

>peptide 2 (39 aa)
MAGVALGHHGGRLKGAVGDLCNRQLLMVGLLGRDDWCIG*

>peptide 3 (31 aa)
MYLPWRGSHLAIMEDGSKALLVISATDSCSW*

>peptide 4 (55 aa)
MPHLNPVGHQSTNWMVRLVLMVATAALTSLGSKPCTCHGGGRTWPSWRTAQRRCW*

Sequence

>CNT30677693
ACAACAAGATAAGATAGGAGCCACTCGGGCAGATCATAGGATAACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCC
TCGTCTCCTTCCTCGCCCTCGTCGAACTCAGCGCCGACCTCCTCGTAGTCCTTCTCGAGCGCAGCCAGGTCAAACTTGTGGTCGATGCGGGAGAACACCT
CGACCACGCTGGTGGAGTTGGAGATCATGCACACGGCACGCTGCACCTTGGCCAGGTCACCGCCAGGCACCACGCTGGGGGGCTGGTAGTTGATGCCGCA
CTTGAACCCAGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTGGTCTTGATGGTGGCAACAGCAGCGTTGACGTCCTTGGGCAGCAAGCCATGTACT
TGCCATGGCGGGGGTCGCACTTGGCCATCATGGAGGACGGCTCAAAGGCGCTGTTGGTGATCTCTGCAACAGACAGCTGCTCATGGTAGGCCTTCTCGGC
AGAGATGACTGGTGCATAGGATGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAAGTTGGTCTGGAACTCGTTCACATCCACGTTCAGAGCACCATCG
AACCTCAGGGAGGCAATC