Detailed information on CNT30677561


BLAST search results

BLAST vs Swiss-Prot:
sp|P31923|SUS2_HORVU, E-value = 4e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30141453Setaria viridisLolium perenne24.0916.7288.6853forward
CNT30679535Setaria viridisTriticum urartu90.9177.2281.5200forward

Expression of CNT30677561

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MDMSAPGETMLNFGSNTSIPWTTRYRPGIVKAM

>peptide 2 (36 aa)
RKHPGCRKCSGRAHRCGHGSSGQRSSGCARSGCTAR*

>peptide 3 (50 aa)
ESTLGVANVAVELTVADTVHLGRDPADVPVQVVLLDKGSRWTCPHQVRQC*

Sequence

>CNT30677561
ACGAAAGCACCCTGGGTGTCGCAAATGTAGCGGTAGAGCTCACCGTTGCGGACACGGTTCATCTGGGCAGAGATCCAGCGGATGTGCCCGTTCAGGTTGT
ACTGCTCGATAAGGGAAGTAGATGGACATGTCCGCACCAGGTGAGACAATGTTGAACTTCGGGTCAAACACATCAATACCGTGGACAACACGGTACAGAC
CAGGCATTGTGAAGGCCATG