Detailed information on CNT30677554


BLAST search results

BLAST vs Swiss-Prot:
sp|P25413|RBL_AEGCR, E-value = 2e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30606537Setaria viridisGossypium raimondii58.589.3487.9157forward
CNT30627897Setaria viridisDaucus carota60.0710.788.2161forward
CNT30683107Setaria viridisTriticum urartu62.6915.5197.02168forward
CNT30477847Setaria viridisArabidopsis halleri58.9671.8288.61158forward
CNT30622174Setaria viridisCajanus cajan58.9621.789.24158forward
CNT30596588Setaria viridisOryza meridionalis52.6160.7895.04141forward

Expression of CNT30677554

Peptides detected in this lncRNA

>peptide 1 (47 aa)
ACTQASKATRLAAAPGAFPQGCPKVPPPNCNTESSPKISVRAGICQT*

Sequence

>CNT30677554
GGGCTTGTACACAGGCTTCTAAAGCCACACGATTAGCTGCTGCACCAGGTGCATTTCCCCAAGGATGTCCTAAAGTTCCTCCACCAAATTGTAATACAGA
ATCGTCTCCAAAGATTTCGGTCAGAGCTGGCATATGCCAAACATGAATACCCCCTGAAGCCACCGATATATTGATCTGCCTCCCCAGGAACGGGCTCGAT
GTGATAGCATCGTCCTTTGTAACGATCAAGACTGGTAAGTCCATCAGTCCAAACAGTTGTCCATGTAC