Detailed information on CNT30677509


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000220, E-value = 1e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3098615Setaria viridisSolanum tuberosum36.0859.6585.29306forward
CNT30247794Setaria viridisAvena sativa38.0947.1593.5323forward
CNT30721349Setaria viridisTriticum spelta17.5749.6794.63149forward
CNT3040082Setaria viridisMarchantia polymorpha26.4253.3384.38224forward

Expression of CNT30677509

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAGVALGHHGGRLKGAVGDLCNRQLLMVGLLGRDDCT*

>peptide 2 (47 aa)
RCCKRHTTTDNSSNRHTDTQQDKIGATRADHRITAAHRPDTAAGSIV*

>peptide 3 (30 aa)
MLPSTSLTEEGVESIITSSNGLVAGHLAISL

>peptide 4 (48 aa)
MASLSSRTATSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFLP*

>peptide 5 (73 aa)
MPHLNPVGHQSTNWMVRLVLMVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIMEDGSKALLVISATDSCSW*

Sequence

>CNT30677509
TAAGATGTTGTAAACGACATACGACGACAGATAACAGTTCAAACCGACACACCGACACACAACAAGATAAGATAGGAGCCACTCGGGCAGATCATAGGAT
AACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCCTCGTCTCCTTCCTCGCCCTCGTCGAACTCAGCGCCGACCTCC
TCGTAGTCCTTCTCGAGCGCAGCCAGGTCACCGCCAGGCACCACGCTGGGGGGCTGGTAGTTGATGCCGCACTTGAACCCAGTGGGGCACCAGTCCACGA
ACTGGATGGTGCGCTTGGTCTTGATGGTGGCAACAGCAGCGTTGACGTCCTTGGGCACCACATCACCACGGTACATGAGGCAGCAAGCCATGTACTTGCC
ATGGCGGGGGTCGCACTTGGCCATCATGGAGGACGGCTCAAAGGCGCTGTTGGTGATCTCTGCAACAGACAGCTGCTCATGGTAGGCCTTCTCGGCAGAG
ATGACTGTACCTGAGACACGAGCCTGTTGAGGTTGGTGTAGGTGGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAG
CAGAACAGCAACATCAGTGTGCTCGAGGAGGGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACCACTGAGGTGGAGACCTGGGGAGATGGGTACACA
GTGAACCCGAGCTTGGACTTCTTGCCATAGTCAACAAAAACAGCACGGGGCACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCAT
CACCTCCTCCAACGGTCTTGTCGCCGGGCATCTGGCCATCAGCCTGAA