Detailed information on CNT30677502


BLAST search results

BLAST vs Swiss-Prot:
sp|A2XNT2|CESA5_ORYSI, E-value = 9e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224742Setaria viridisHordeum vulgare33.3347.8690.18112forward
CNT30314318Setaria viridisCamelina sativa51.4956.5481.5173forward
CNT30655297Setaria viridisRosa chinensis25.615.5587.2186forward
CNT30722091Setaria viridisTriticum spelta61.0122.4886.34205forward
CNT30572236Setaria viridisVitis vinifera33.3318.8984.82112forward

Expression of CNT30677502

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MDNHPKCKEELPEEGSPGFISVVDRIGNTGYHSNEVQEEQSGWRYKKGRPFECVINFPVSKQMAGNVQ*

>peptide 2 (87 aa)
QSSEKIEAKRMDQTMTMVGVLFCLPTKPLRNGYRWTITQNAKKSFPKRGPQDSYPLLIALEIPATTPMKFKRSRVVGGIRRVVHLNV*

Sequence

>CNT30677502
CAGAGCAGCGAGAAGATTGAAGCCAAGAGGATGGACCAGACAATGACAATGGTTGGCGTCCTGTTCTGCCTCCCAACCAAACCCTTGAGGAACGGGTACA
GATGGACAATCACCCAAAATGCAAAGAAGAGCTTCCCGAAGAGGGGTCCCCAGGATTCATATCCGTTGTTGATCGCATTGGAAATACCGGCTACCACTCC
AATGAAGTTCAAGAGGAGCAGAGTGGTTGGAGGTATAAGAAGGGTCGTCCATTTGAATGTGTAATAAATTTCCCTGTCAGCAAGCAGATGGCAGGCAATG
TGCAATAGGCCAGGAGTGGGATGGATGTCCAAGGGT