CANTATAdb - search

Detailed information on CNT30677492

BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 8e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30570286	Setaria viridis	Vitis vinifera	28.06	36.38	85.47	179	forward

Expression of CNT30677492

Peptides detected in this lncRNA

>peptide 1 (60 aa)
QKRSRTKQVSYNIRCCKRHTTTDNSSNRHTDTQQDKIGATRADHRITAAHRPDTAAGSIV*

>peptide 2 (30 aa)
MLPSTSLTEEGVESIITSSNGLVAGHLAISL

Sequence

>CNT30677492
CCAGAAACGAAGCAGGACTAAACAAGTTTCTTACAACATAAGATGTTGTAAACGACATACGACGACAGATAACAGTTCAAACCGACACACCGACACACAA
CAAGATAAGATAGGAGCCACTCGGGCAGATCATAGGATAACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCCTCGT
CTCCTTCCTCGCCCTCGTCGAACTCAGCGCCGACCTCCTCGTAGTCCTTCTCGAGCGCAGCCAGGTCCTCACGGGCCTCAGAGAACTCGCCCTCCTCCAT
GCCCTCACCCACGTACCAGTGAACGAAGGCACGCTTGGCGTACATGAGGTCAAACTTGTGGTCGATGCGGGAGAACACCTCGACCACGCTGGTGGAGTTG
GTGTAGTGACCACGGGCAAAGTTATTGGCAGCATCCTCCTTGCCACTGATGAGCTGCTCAGGGTGGAAGAGCTGGCGGTAAGTACCAGTCCTCACCTCAT
CAATCACAGTGGGCTCAAGGTCAACAAAAACAGCACGGGGCACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCTCC
AACGGTCTTGTCGCCGGGCATCTGGCCATCAGCCTGAA