Detailed information on CNT30677476


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691981Setaria viridisOryza sativa32.7618.6789.4776forward
CNT30100849Setaria viridisOryza rufipogon31.0315.3890.2872forward

Expression of CNT30677476

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MAASLPLKKLTAELAVGEEGGNSSETLRFWWRENLGIGRELGGGELENAGPA

>peptide 2 (36 aa)
TELLTRHSVILNFQVKDPPQILCRNGSIITTKEANS*

>peptide 3 (31 aa)
HRTADPPFSDPQFSSEGSSSDSLSQWQHHYH*

Sequence

>CNT30677476
ACACAGAACTGCTGACCCGCCATTCAGTGATCCTCAATTTTCAAGTGAAGGATCCTCCTCAGATTCTCTGTCGCAATGGCAGCATCATTACCACTAAAGA
AGCTAACAGCTGAGCTGGCAGTCGGAGAGGAAGGTGGAAACTCAAGTGAGACGCTACGCTTCTGGTGGAGGGAGAACTTGGGTATCGGCAGAGAGCTGGG
AGGTGGTGAGTTGGAGAACGCTGGACCAGCCC