Detailed information on CNT30677435


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Setaria viridisSetaria italica10036.3199.76423reverse complement
CNT30470142Setaria viridisSaccharum spontaneum60.7634.3685.6257reverse complement
CNT307034Setaria viridisZea mays28.1315.0887.39119reverse complement
CNT30346089Setaria viridisEragrostis tef39.7229.8985.12168reverse complement
CNT30581754Setaria viridisEchinochloa crusgalli52.0128.7692.73220reverse complement

Expression of CNT30677435

Peptides detected in this lncRNA

>peptide 1 (31 aa)
HNLKTSDSMQCNGLKIRPKNHFYTFLTLDTI*

>peptide 2 (31 aa)
MNMVAPHNSVPTTTAISGGAAEKLSIMGVSN*

Sequence

>CNT30677435
ACATAATTTGAAGACTTCGGATTCCATGCAATGCAACGGGCTGAAGATCCGGCCTAAGAACCACTTTTACACCTTCCTGACTCTAGATACTATATAAAGT
TGGAGGGTAGAGGCAGGGGAGGTGGAAAAGCAGGCATGAACATGGTGGCGCCCCACAATTCTGTACCAACCACAACGGCAATATCAGGAGGCGCTGCTGA
AAAGTTGTCAATCATGGGTGTCTCCAATTGATCATAGTCCCATAGGTAGTTCAAGTTTCATGTCCGTTGCACTGTCACCATGTTCAACCGTAGCGATTGA
GACTATAAGAGGAAACTAGGACATGGCTAAGATTATAGGAGGCGTTGGGTTAAAGCTAAACAGAGCAAACACACATTGAGATTCGCCACGGGTCTAATGA
ATGGAGCTTCTGGATATTTTCAT