« Back to Setaria viridis search


Detailed information on CNT30677409


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 3e-97

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30525072Setaria viridisPhaseolus vulgaris49.0151.9994.14222reverse complement

Expression of CNT30677409

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MLLEPRASWFSPKCVEAQQLTGHLGVKHGFSAGYASGTKLRQTLNTRYHSERAWILTLCQTREPRDSLR*

Sequence

>CNT30677409
ACCGTGAGGGAAAGGTGAAAAGAACCCCCAGTGGGTGATCTATCCCTGACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAATTGACTGATGTT
GAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCTACTCGAACCCAGAGCGAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGG
ACATCTAGGGGTAAAGCACGGTTTCAGTGCGGGCTACGCGAGCGGTACCAAATTAAGGCAAACTCTGAATACTAGATATCACTCTGAAAGAGCTTGGATT
CTAACCTTGTGTCAGACCCGTGAGCCAAGGGACAGTCTTAGGTAGACAGTTTCTACAAGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTT
CCTCGGGCCAGACGGACATTGGTCCTCGAGTGCAAAGGTAGAAGGGAGCGAAC