Detailed information on CNT30677344


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696855Setaria viridisOryza sativa25.3630.9289.72107forward
CNT30555309Setaria viridisOryza glaberrima25.3621.2789.72107forward
CNT30117901Setaria viridisOryza nivara25.3617.9589.72107forward

Expression of CNT30677344

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MGRWWCFFSPLASSASLWSFFFSWCSWKKWWCFSSDMAAAVSWSANVAASLGVVLVHLASSCL*

>peptide 2 (62 aa)
TTDRQELDLGATHVAPGYSTQLYMQRKIKQVHMMSTSPHTAPPLSLSQASEGPERTYLYILQ*

>peptide 3 (32 aa)
PQIDKSLTWEPHTSLLVIQRNYTCREKSSKYT*

Sequence

>CNT30677344
ACCACAGATAGACAAGAGCTTGACTTGGGAGCCACACACGTCGCTCCTGGTTATTCAACGCAATTATACATGCAGAGAAAAATCAAGCAAGTACACATGA
TGAGCACCTCGCCGCACACGGCCCCACCTCTCAGTCTCTCACAAGCAAGCGAAGGTCCGGAAAGGACTTATTTGTACATACTGCAGTGACTCGTCAAATT
AACACGTACGCGTGCACACAAGCAAGTAATGGGCAGGTGGTGGTGCTTCTTCTCGCCGCTGGCCTCCTCGGCTTCCTTGTGGTCCTTCTTCTTCTCGTGG
TGCTCGTGGAAGAAGTGGTGGTGCTTCTCCTCCGACATGGCTGCTGCTGTCAGCTGGTCAGCTAATGTGGCTGCTTCACTGGGAGTAGTACTCGTACACT
TGGCTAGCTCTTGCCTGTGAGT