Detailed information on CNT30677326


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30226387Setaria viridisHordeum vulgare43.616.7785.32109forward
CNT30248128Setaria viridisAvena sativa4617.0990.43115reverse complement

Expression of CNT30677326

Peptides detected in this lncRNA

>peptide 1 (40 aa)
PENMGNSKCSCRLRRCHPQQYNQNNMLLPERLRSSRTLPR*

>peptide 2 (70 aa)
SRKHGKQQVFLQTASVPPTAIQPKQHAFARAAAQQPHSAAMTRHMITIKAVVVLFPSIASSCCYLPWLPS*

>peptide 3 (68 aa)
QKTWETASVLADCVGATHSNTTKTTCFCPSGCAAAALCRDDQAHDHHQSGGSPLSLHCLLLLLPSLVT*

Sequence

>CNT30677326
TCCAGAAAACATGGGAAACAGCAAGTGTTCTTGCAGACTGCGTCGGTGCCACCCACAGCAATACAACCAAAACAACATGCTTTTGCCCGAGCGGCTGCGC
AGCAGCCGCACTCTGCCGCGATGACCAGGCACATGATCACCATCAAAGCGGTGGTAGTCCTCTTTCCCTCCATTGCCTCCTCTTGCTGCTACCTTCCTTG
GTTACCTAGCTAAGTTTATTGGTTTTGTGTTGAGAGGTGATTCTTGCATT