Detailed information on CNT30677319


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43766|NLTP3_HORVU, E-value = 1e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697225Setaria viridisOryza sativa28.577.6688.4678forward
CNT30524578Setaria viridisSetaria italica10065.4799.63273forward
CNT30555884Setaria viridisOryza glaberrima24.5420.3686.5767forward
CNT30440524Setaria viridisAegilops tauschii31.511.2788.3786forward
CNT30250949Setaria viridisAvena sativa24.1816.4686.3666forward
CNT30136754Setaria viridisLolium perenne43.5951.2984.87119forward
CNT30352809Setaria viridisEragrostis tef43.5927.3694.12119forward
CNT30367194Setaria viridisSorghum bicolor42.1248.5287.83115forward
CNT30597201Setaria viridisOryza meridionalis43.5947.2286.55119forward
CNT30371399Setaria viridisOryza glumipatula43.5928.1386.55119forward
CNT30104115Setaria viridisOryza rufipogon43.5939.5385.71119forward
CNT30578372Setaria viridisOryza barthii39.567.987.96108forward
CNT30118058Setaria viridisOryza nivara25.2712.9285.5169forward
CNT30593112Setaria viridisEragrostis curvula24.1822.2292.4266forward

Expression of CNT30677319

Peptides detected in this lncRNA

>peptide 1 (90 aa)
LVAVGGHADGEWHGDAALAGDAGDGAHVELLDAAGEALEAAHAAAATRGHRVGVPRRVRDARRQRRRHLTAGDRRRRRRHQRRRREHHGQG

>peptide 2 (68 aa)
LLQSVDMLMGNGTETPHLPGMPATVPMLSFLMLPARLLRLRTPPQQPEGIALAFPVAYGMHGASDDAT*

Sequence

>CNT30677319
CTTGTTGCAGTCGGTGGACATGCTGATGGGGAATGGCACGGAGACGCCGCACTTGCCGGGGATGCCGGCGACGGTGCCCATGTTGAGCTTCTTGATGCTG
CCGGCGAGGCTCTTGAGGCTGCGCACGCCGCCGCAGCAACCCGAGGGCATCGCGTTGGCGTTCCCCGTCGCGTACGGGATGCACGGCGCCAGCGACGACG
CCACCTGACCGCAGGTGATCGCCGCCGACGACGACGCCACCAGCGCCGCCGCCGCGAACACCATGGCCAGGGC