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Detailed information on CNT30677300


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 3e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT302540Setaria viridisZea mays15.6920.6394.48145forward
CNT30353507Setaria viridisEragrostis tef39.0728.2590.3361forward
CNT30581942Setaria viridisEchinochloa crusgalli13.7427.3196.85127forward

Expression of CNT30677300

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MTVSRLLPKGSLRCLARFSTGPSPVTYAWMKKANMENMASRPFLISFTLRMAAWSGSLARPNGSSPLMIR*

>peptide 2 (71 aa)
MRAIVRHIWGRDCYSSMKILRGGDQDLEPDGLRATVGAELVAGFGDDGTGGAEHGPPGVDQLVGLVDPPVRA

Sequence

>CNT30677300
AACTTGGAAGTTGGAATCTTAAACGAGCGATCAATTAAGTAGCATGTCTCAGGCACAAATTCTAACAGCAGTCATATCAGATATTCAGATCAGAGATCGG
AACGAAATGGTTTCTTGCCCCTCTTGATAATTTACACGCATGGCACATTCATCGGACCCTCACACACACATTGTTTCCGGGTAAGATCAAACGCAGCAGC
AGCCTCTCACAGGCTGGGCGTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGCCGAAGGGGTCGCTGAGGTGCTTGGCGAGGTTCTCGACG
GGGCCCTCGCCGGTGACGTACGCCTGGATGAAGAAGGCGAACATGGAGAACATGGCGAGCCGGCCGTTCTTGATCTCCTTCACCTTGAGGATGGCGGCCT
GGTCGGGGTCGCTGGCCAGACCCAATGGGTCCAGCCCGTTGATGATCCGGTAGTACTCGGCGCCGCCGACGAGGACGACCTCGGCGATGACGGCAACCAC
CAGGTTGATGGGGATGCTGTTGCCGAAGTAGCTGAGGGTGTTGCCGTCCAGGAGCAGGGCGCCGGTCTGCATTGTATTACGGTGGCGCCGCCATTAGTTC
ACAGTTCAGAATTTCAGTTTCAGAGATTGCAATTGCAACTATTCTACCACTGAAATGTGTGGTCTTTGTGAAACAATGTTGAGTTCTTTTCTTTTTTCAT
AAATTCAAATGCGCGCGATTGTCCGGCACATTTGGGGAAGAGATTGCTACTCAAGTATGAAGATTCTTAGAGGTGGTGATCAGGACCTTGAACCAGACGG
CCTCAGGGCCACAGTTGGCGCCGAACTTGTTGCAGGCTTCGGGGATGACGGCACCGGCGGCGCCGAGCATGGCCCACCTGGCGTGGATCAGCTCGTAGGC
CTGGTAGATCCTCCTGTCAGGGCC