Detailed information on CNT30677245


BLAST search results

BLAST vs Swiss-Prot:
sp|O23254|GLYC4_ARATH, E-value = 4e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697365Setaria viridisOryza sativa21.3617.6791.4947forward
CNT30524209Setaria viridisSetaria italica303.5610066forward
CNT30517283Setaria viridisJuglans regia23.64696.1552forward
CNT30709157Setaria viridisGlycine max3010.4690.9166forward
CNT30179070Setaria viridisSecale cereale3013.4495.4566forward
CNT30237993Setaria viridisBrassica oleracea29.0913.0185.9464forward
CNT30650801Setaria viridisRosa chinensis305.0290.9166forward
CNT30365375Setaria viridisSorghum bicolor3011.8396.9766forward
CNT30620724Setaria viridisCajanus cajan3010.2889.3966forward

Expression of CNT30677245

Peptides detected in this lncRNA

>peptide 1 (57 aa)
LHALKREPRHVEGVSKLLHLSLEVLDVLVVHQALVEVLEELAMLLLDVQADGSRSRR*

>peptide 2 (71 aa)
FMLSSVNPGMSKESANFSTSALRFSMSLLFTRPLLKSLRSLPCSFWMFRQMVLDLVDDVVAAVVAGAGHALG

Sequence

>CNT30677245
ACTTCATGCTCTCAAGCGTGAACCCAGGCATGTCGAAGGAGTCAGCAAACTTCTCCACCTCAGCCTTGAGGTTCTCGATGTCCTTGTTGTTCACCAGGCC
CTTGTTGAAGTCCTTGAGGAGCTTGCCATGCTCCTTCTGGATGTTCAGGCAGATGGTTCTCGATCTCGTCGATGACGTCGTTGCCGCCGTAGTAGCGGGC
GCCGGGCATGCCCTCGGAGT