« Back to Setaria viridis search


Detailed information on CNT30677202


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 1e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639585Setaria viridisNymphaea colorata17.4630.4284.9373forward
CNT30207455Setaria viridisHelianthus annuus22.9714.5284.3896forward

Expression of CNT30677202

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPRVGALVHGVQVVEGLGPHLLCNLEGPLDAVLTVKKDFRLHNWHQAVV

Sequence

>CNT30677202
ACCAGCATACCACAGGCCACATAAGGTAGTAACCATGTGAATGCGAACCTGCAGTACCAGCATACCGAGGATAGTAAAATCGCAGTGTACTCTTTGTCCC
ATCTGAACCTGTAATATGGCACACTGCCTACAGTGTGCCCTCGAGGTAGGTACTAGGCTACTAGCAGCGCGTATTAGTAGACGTAGTTCTTGACGAACAT
TCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGGAGGTGTTCTGAAGAGCCCTGGCGTAGGAGAAGGACACATGCCACGGGTTGGGGCTCTGGTTCATGGCG
TTCAGGTAGTAGAAGGTCTCGGCCCACACCTTCTGTGCAACCTCGAAGGTCCTCTCGATGCCGTGCTCACCGTCAAGAAGGATTTCAGGCTCCACAATTG
GCACCAGGCCGTTGTCCT