Detailed information on CNT30677187


BLAST search results

BLAST vs Swiss-Prot:
sp|O23254|GLYC4_ARATH, E-value = 3e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30436120Setaria viridisAegilops tauschii79.2446.4589.52229forward
CNT30248419Setaria viridisAvena sativa20.7613.2591.6760forward
CNT30449919Setaria viridisSaccharum spontaneum49.8329.2783.33144forward
CNT30134938Setaria viridisLolium perenne66.7835.4889.12193forward
CNT30714749Setaria viridisMalus domestica golden20.4225.4386.4459forward
CNT30353463Setaria viridisEragrostis tef77.1616.1492.38223forward
CNT30117829Setaria viridisOryza nivara53.9826.0492.31156forward

Expression of CNT30677187

Peptides detected in this lncRNA

>peptide 1 (94 aa)
FMLSSVNPGMSKESANFSTSALRFSMSLLFTRPLLKSLRSLPCSFWMFRQMVTARWRNSPICSKSFSTRPLEVIAGSRRKAASARERQRFSISSM

>peptide 2 (95 aa)
LHALKREPRHVEGVSKLLHLSLEVLDVLVVHQALVEVLEELAMLLLDVQADGHRPVEELANLLKVFLHQTPRGHCRVEAEGGERAGAAEVLDLVDD

Sequence

>CNT30677187
ACTTCATGCTCTCAAGCGTGAACCCAGGCATGTCGAAGGAGTCAGCAAACTTCTCCACCTCAGCCTTGAGGTTCTCGATGTCCTTGTTGTTCACCAGGCC
CTTGTTGAAGTCCTTGAGGAGCTTGCCATGCTCCTTCTGGATGTTCAGGCAGATGGTCACCGCCCGGTGGAGGAACTCGCCAATCTGCTCAAAGTCTTTC
TCCACCAGACCCCTCGAGGTCATTGCCGGGTCGAGGCGGAAGGCGGCGAGCGCGCGGGAGCGGCAGAGGTTCTCGATCTCGTCGATGAC