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Detailed information on CNT30677123


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09FP9|YCF15_NANDO, E-value = 3e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30591166Setaria viridisMusa acuminata87.1934.0386.06667forward
CNT30607759Setaria viridisGossypium raimondii51.3713.1481.93393forward

Expression of CNT30677123

Peptides detected in this lncRNA

>peptide 1 (47 aa)
IPLLQNKTISIRLGKLECVLSIWEIFQSRRSIDLRQRQRAHFLYLFS*

>peptide 2 (61 aa)
MCIIHMGDLPIEKIHRSETKTKGPFSLLIQLNQGFVMEVESNNHFIRHAYFCLSGGFTQFH*

>peptide 3 (36 aa)
MKRPEIIQINCSLLQLILFNLLGAAPIPIGKSLVIFS

>peptide 4 (30 aa)
MSGKSFSCYTNQMFHPGKATSFSTNNVFVI*

Sequence

>CNT30677123
GGATACCTTTGCTTCAGAACAAAACAATTAGCATTAGGCTCGGTAAACTAGAATGTGTATTATCCATATGGGAGATCTTCCAATCGAGAAGATCCATCGA
TCTGAGACAAAGACAAAGGGCCCATTTTCTTTACTTATTCAGTTAAACCAAGGATTCGTTATGGAAGTAGAAAGCAACAACCATTTCATCAGACATGCAT
ACTTTTGTTTATCCGGTGGATTTACACAGTTTCATTAATGCAAATTGTTTGATGTAGTTAGTACTCAGGTTGTTCGATGCTCAAGAATTCTTATTTAGGC
AGTTCATATCATCCCATACATAGTGTTTTGATCTAAGATTGCAATTCTTCCATGTTTCCACAGTAGCATATTGTTCTATGGAGCTGGGGTCCAAAATAGG
AATCAACAAGTGTTTCCACAACTCTACGGCCCGGCCAATCCTGTTCCACTGAATCCCCTCCCTTTTTCATGGCCACATATCTTTACGGCTAATGAGTGGG
AAATCTTTCTCCTGTTACACAAATCAAATGTTTCATCCAGGAAAAGCCACCTCTTTCTCCACAAACAATGTCTTTGTCATTTGATCCAGGAGCCTTCCGT
TAGATAGGAACAACTTTGCTAAATATTGAGAACTCTTAGATAGAGTATTAGAATGAAAAGGCCAGAAATAATTCAAATAAATTGCAGTCTCTTACAACTC
ATCCTCTTTAATCTGCTTGGAGCCGCTCCAATACCCATAGGAAAATCCCTAGTCATATTCAGCGT