Detailed information on CNT30677121


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697771Setaria viridisOryza sativa16.3720.2590.7765forward
CNT30297317Setaria viridisTriticum aestivum21.6623.1889.5386forward
CNT30391100Setaria viridisTriticum turgidum21.6614.1488.3786forward
CNT30439146Setaria viridisAegilops tauschii20.6518.8590.2482forward
CNT30258377Setaria viridisAvena sativa20.6512.0290.2482forward
CNT30662351Setaria viridisTriticum dicoccoides20.6515.4490.2482forward
CNT30138781Setaria viridisLolium perenne21.6614.5891.8686forward
CNT30352984Setaria viridisEragrostis tef22.1715.0492.0588forward

Expression of CNT30677121

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLASDQGPLEACPFHPSEVEDRPCLASAERAKREEAAGR

>peptide 2 (56 aa)
PAFNSSSSINLIILILILSDYNMYIYIATGSISQTLARDFHSPKFPDTIKNINSKL*

Sequence

>CNT30677121
ACCAGCTTTCAACAGCTCCAGCTCAATCAACCTAATCATCCTCATCCTCATCCTATCCGATTATAACATGTATATATATATAGCAACAGGTAGCATTTCT
CAAACTCTGGCTAGAGATTTTCACTCGCCAAAATTTCCTGATACCATAAAGAATATTAATTCCAAACTGTGATCATCTACAACCCCATAGTTCAACTTCT
GCTTACACTGGAAAAATCCGAATCATCATCTAAGCGCTCTGCAAAACCAACCTAGTAGCTTCCCATTGGTGGCATCCCAAATGCTGGCATCGGACCAGGG
CCCATTGGAGGCATGCCCATTCCACCCATCGGAGGTGGAGGACCGCCCATGCCTGGCATCGGCGGAGCGGGCAAAGCGAGAGGAAGCAGCTGGGCGT