CANTATAdb - search

Detailed information on CNT30677101

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001340, E-value = 1e-110

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30562726	Setaria viridis	Actinidia chinensis	15.96	35.01	88.49	139	forward
CNT30332809	Setaria viridis	Dioscorea rotundata	29.51	37.19	94.94	257	reverse complement
CNT30603707	Setaria viridis	Oryza punctata	39.84	98.86	89.63	347	reverse complement

Expression of CNT30677101

Peptides detected in this lncRNA

>peptide 1 (36 aa)
EGESGPKIWPKGVVDGQQVNIPVLPLVAMEGWRRLG*

>peptide 2 (69 aa)
MSVKMRTTCTWTERPYEALLFTGIGFRPILRSLGRQFLQGVGLPKGNGGVQRFPRARRTLVLECKGRRER

>peptide 3 (35 aa)
MLRAEVRVPSAVALKYEPCGLAIASLRGSYQELRC*

Sequence

>CNT30677101
AGAGGGTGAGTCAGGGCCTAAGATCTGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACCCCTTGTTGCTATGGAGGGATGGAGG
AGGCTAGGTTAGCCGAAACATGGTTATAGGTTTAAGGACACAACGTGACCCTGCTTTTTCAGGGTAAGAAGGGGTTGAGAAAATGCTTCGAGCCGAGGTC
CGAGTACCAAGTGCTGTAGCGCTGAAGTATGAGCCCTGTGGACTAGCCATTGCTTCTCTACGAGGCTCATACCAGGAGCTACGGTGCTGAAGTATGTAGC
CCATGCCATACTCCCAGGAAAAACTCAAACGACCTTCAACAAAAGGGTACCTATACCCGAAACTGACACAGGTGGGTAGGTAGAGAATACCTAGGGGTGC
GAGACAACTCTCTCTAAGGAACTCGGCAAAATGGCCCCGTAACTTCGGGAGAAGGGGTGCCCACTCGCAAAAGGAGGTCGCTGTGACCAGGCCCGGGCGA
CTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGAGCTGATGCCTGCCCAATGCTGGAAGGTCAAGGAAGTTGGTAAGTTCCGA
CCTGCACGAAAGGCATAATGATCTAGGCACTGTCTCGGAGAGAGGCTCAGTGAAATAGACATGTCTGTGAAGATGAGGACTACCTGCACCTGGACAGAAA
GACCCTATGAAGCTTTACTGTTCACTGGGATTGGCTTTAGGCCTATCCTGCGCAGCTTAGGTAGACAGTTTCTACAAGGCGTAGGCCTCCCAAAAGGTAA
CGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGACATTGGTCCTCGAGTGCAAAGGTAGAAGGGAGCGAA