« Back to Setaria viridis search


Detailed information on CNT30677083


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 3e-144

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524664Setaria viridisSetaria italica58.830.7593.59421forward
CNT30513456Setaria viridisJuglans regia58.813.2693.11421forward
CNT30500477Setaria viridisCoffea canephora58.823.1293.35421forward
CNT30269781Setaria viridisChenopodium quinoa58.814.2592.4421forward
CNT30730500Setaria viridisCorchorus capsularis58.835.4793.11421forward
CNT30630109Setaria viridisVigna unguiculata58.813.3692.87421forward
CNT30196411Setaria viridisPisum sativum59.0833.4489.36423forward
CNT30503431Setaria viridisNicotiana attenuata58.830.4992.87421reverse complement
CNT3090649Setaria viridisSolanum tuberosum58.815.493.11421forward
CNT30193689Setaria viridisSecale cereale58.834.0694.77421forward
CNT30221722Setaria viridisHordeum vulgare51.8237.8695.15371reverse complement
CNT3089856Setaria viridisVigna radiata32.8256.2291.06235reverse complement
CNT30310298Setaria viridisCamelina sativa58.827.6192.64421reverse complement
CNT3062651Setaria viridisArabidopsis lyrata58.850.692.4421reverse complement
CNT30655263Setaria viridisRosa chinensis58.823.3290.02421forward
CNT30206293Setaria viridisHelianthus annuus58.819.1693.35421forward
CNT30722943Setaria viridisTriticum spelta58.820.9194.77421forward
CNT30154922Setaria viridisPrunus persica58.824.9390.26421reverse complement
CNT30412183Setaria viridisPapaver somniferum58.814.9592.16421forward
CNT30646402Setaria viridisCannabis sativa58.833.2889.31421reverse complement

Expression of CNT30677083

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MMGDKLHRREGNSPDHQLRPLNDRSVRKEGESGPKIWPKGVVDGQQVNIPVLPLVAMEGWRRLG*

>peptide 2 (59 aa)
MLLEPRASWFSPKCVEAQQLTGHLGVKHGFSAGYASGTKLRQTLNTRYDPKITGVKIGQ*

Sequence

>CNT30677083
ACCGTGAGGGAAAGCGAGTCTTCATAGGGTGATTGTCACTGCTTATGGACCCAAACCTAGGTGATCTATCCCTGACCAGGATGAAGCTTGGATGAAACTA
AGCAGAGGTCCGAATTGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCTACTCGAACCCAGAGCGAGCTGGTTCTCCCCGAAA
TGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACGGTTTCAGTGCGGGCTACGCGAGCGGTACCAAATTAAGGCAAACTCTGAATACTA
GGTATGACCCAAAAATAACAGGGGTCAAGATCGGTCAATGAGATGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCAGATCACCAGCTAAGGC
CCCTAAATGACCGCTCAGTGAGAAAGGAGGGTGAGTCAGGGCCTAAGATCTGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACC
CCTTGTTGCTATGGAGGGATGGAGGAGGCTAGGTTAGCCGAAACATGGTTATAGGTTTAAGGACACAACGTGACCCTGCTTTTTCAGGGTAAGAAGGGGT
AGACAGTTTCTACAAGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGACATTGGTCCTCGAGTGCAAAGGTAGAA
GGGAGCGAACAATTGA