Detailed information on CNT30677042


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 3e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30465769Setaria viridisSaccharum spontaneum67.0354.0993.89311forward
CNT30365046Setaria viridisSorghum bicolor67.0332.2993.89311forward
CNT30597100Setaria viridisOryza meridionalis29.3118.588.97136forward

Expression of CNT30677042

Peptides detected in this lncRNA

>peptide 1 (32 aa)
DQLSSMSQAQILTAVISDIQIRDRNEMVSCPS*

>peptide 2 (82 aa)
MTVSRLLPKGSLRCLARFSTGPSPVTYAWMKKANMENMASRPFLISFTLRMAAWSGSLARPNGSNGPPGWSLSSRSSPLMIR*

Sequence

>CNT30677042
GCGATCAATTAAGTAGCATGTCTCAGGCACAAATTCTAACAGCAGTCATATCAGATATTCAGATCAGAGATCGGAACGAAATGGTTTCTTGCCCCTCTTG
ATAATTTACACGCATGGCACATTCATCGGACCCTCACACACACATTGTTTCCGGATGACGGTGAGCAGGTTGTTGCCGAAGGGGTCGCTGAGGTGCTTGG
CGAGGTTCTCGACGGGGCCCTCGCCGGTGACGTACGCCTGGATGAAGAAGGCGAACATGGAGAACATGGCGAGCCGGCCGTTCTTGATCTCCTTCACCTT
GAGGATGGCGGCCTGGTCGGGGTCGCTGGCCAGACCCAATGGGTCGAACGGGCCGCCCGGGTGGAGCTTGTCCTCCAGGTCCAGCCCGTTGATGATCCGG
TAGTACTCGGCGCCGCCGACGAGGACGACCTCGGCGATGACGGCAACCACCAGGTTGATGGGGA