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Detailed information on CNT30677018


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524429Setaria viridisSetaria italica53.1729.6598.01201forward

Expression of CNT30677018

Peptides detected in this lncRNA

>peptide 1 (30 aa)
RHTLPCKRIIAYTTAERDLIHQSTHTCIGM*

>peptide 2 (87 aa)
TTHTTMQAYNSVHDGGERSYSSVNSYMYRYVATVEAGRLRSGGMDHRSGGRVNYLEQSVELTWPQLMAASEAAAASSTTATTASTTT*

Sequence

>CNT30677018
GACGACACACACTACCATGCAAGCGTATAATAGCGTACACGACGGCGGAGAGAGATCTTATTCATCAGTCAACTCATACATGTATAGGTATGTAGCGACG
GTGGAGGCAGGCAGGCTTCGGAGCGGTGGAATGGATCATAGATCCGGCGGTCGTGTTAATTACCTGGAGCAGTCGGTGGAGTTGACCTGGCCGCAGCTGA
TGGCGGCCTCGGAGGCCGCCGCGGCGAGCAGCACCACGGCCACGACGGCGAGCACCACCACCTGAGCGCGAGCCATGCTGATGTGCGTGTTCCTGTGCTA
GCTGCTAGCTGCGCTGTGGTCGATGGATCGGACGATGTGCTCTACAAGCTGCTTGGGAAGAATGTGCTTTGCTTTGCT