Detailed information on CNT30677012


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 3e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697405Setaria viridisOryza sativa30.2146.9290.14213forward
CNT30524410Setaria viridisSetaria italica68.2361.5199.17481forward
CNT30184672Setaria viridisSecale cereale19.4341.5286.86137forward
CNT30295002Setaria viridisTriticum aestivum34.7547.4888.98245forward
CNT30390869Setaria viridisTriticum turgidum23.1234.6888.34163forward
CNT30438779Setaria viridisAegilops tauschii27.2330.4386.46192forward
CNT30249379Setaria viridisAvena sativa24.1142.8287.65170forward
CNT30137065Setaria viridisLolium perenne29.2245.0890.29206forward
CNT30597113Setaria viridisOryza meridionalis30.6428.883.33216forward
CNT30371307Setaria viridisOryza glumipatula36.3123.6483.98256forward
CNT30104243Setaria viridisOryza rufipogon24.9632.5988.64176forward
CNT30578126Setaria viridisOryza barthii36.3130.491.8256forward
CNT30498372Setaria viridisDigitaria exilis29.9344.4295.73211forward
CNT3039554Setaria viridisMarchantia polymorpha22.9844.2686.42162forward

Expression of CNT30677012

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MTVSRLLPKGSLRCLARFSTGPSPVTYAWMKKANMENMASRPFLISFTLRMAAWSGSLARPNGSNGPPGWSLSSRSSPLMIR*

Sequence

>CNT30677012
AGTTGGAATCTTAAACGAGCGATCAATTAAGTAGCATGTCTCAGGCACAAATTCTAACAGCAGTCATATCAGATATTCAGATCAGAGATCGGAACGAAAT
GGTTTCTTGCCCCTCTTGATAATTTACACGCATGGCACATTCATCGGACCCTCACACACACATTGTTTCCGGGTAAGATCAAACGCAGCAGCAGCCTCTC
ACAGGCTGGGCGTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGCCGAAGGGGTCGCTGAGGTGCTTGGCGAGGTTCTCGACGGGGCCCTC
GCCGGTGACGTACGCCTGGATGAAGAAGGCGAACATGGAGAACATGGCGAGCCGGCCGTTCTTGATCTCCTTCACCTTGAGGATGGCGGCCTGGTCGGGG
TCGCTGGCCAGACCCAATGGGTCGAACGGGCCGCCCGGGTGGAGCTTGTCCTCCAGGTCCAGCCCGTTGATGATCCGGTAGTACTCCGGCACCTCCGAGC
GGTCCAAGAGACCATCCGGCAGGCTTCTTGCTGAAGAGAGAGACGATCTTCTGCGCTCCGGCGGTCGGCGCAGCGGTGGCGTACCGTGAGGAGCCGGCGA
AGTTGATCTGGGTGCCGAGGATCTTCGATGGAGCGAGCGCCGCCATTGCCACAGACCCACAGTTCAGAGGAAGAATTGCAGGAGGGGGATGGCTGATGGG
CGTTT