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Detailed information on CNT30677010


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 6e-26

BLAST vs NONCODE:
NONZMAT001340, E-value = 1e-110

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Setaria viridisOryza sativa91.5133.2493.89851forward
CNT30177273Setaria viridisSecale cereale91.5193.6293.54851forward
CNT30291213Setaria viridisTriticum aestivum91.5124.593.54851forward
CNT30399645Setaria viridisTriticum turgidum91.5137.2193.3851forward
CNT30444225Setaria viridisAegilops tauschii91.5177.0892.95851forward
CNT30460907Setaria viridisSaccharum spontaneum91.5125.5494.12851forward
CNT3018333Setaria viridisZea mays91.5129.8194.12851forward
CNT30689043Setaria viridisTriticum urartu91.5142.3293.3851forward
CNT30596725Setaria viridisOryza meridionalis91.6124.6993.78852forward

Expression of CNT30677010

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSKCINRGAFHLRGKQTRKRGLTKWKRECRLE*

>peptide 2 (29 aa)
KGSVEAVGCQNASIGERSTLEGSKHESGG*

>peptide 3 (61 aa)
MPAQCWKVKEVGELMIGKPAAKALVNGGRNYNGPKVTEACKGFLGPDGHWSSSAKVEGSEQL

>peptide 4 (55 aa)
MVRIQCPENPRFPPQGLSTEGESGPKIWPKGVVDGQQVNIPVLPLVAMEGWRRLG*

>peptide 5 (35 aa)
MLRAEVRVPSAVALKYEPCGLAIASLRGSYQELRC*

Sequence

>CNT30677010
CTAAGGGATCTGTCGAAGCTGTGGGATGTCAAAATGCATCAATAGGGGAGCGTTCCACCTTAGAGGGAAGCAAACACGAAAGCGGGGGTTGACGAAATGG
AAGAGAGAATGTCGGCTTGAGTAACGAAAACAATGGTGAGAATCCAATGCCCTGAAAATCCAAGGTTTCCTCCACAAGGTTTGTCCACAGAGGGTGAGTC
AGGGCCTAAGATCTGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACCCCTTGTTGCTATGGAGGGATGGAGGAGGCTAGGTTAG
CCGAAACATGGTTATAGGTTTAAGGACACAACGTGACCCTGCTTTTTCAGGGTAAGAAGGGGTTGAGAAAATGCTTCGAGCCGAGGTCCGAGTACCAAGT
GCTGTAGCGCTGAAGTATGAGCCCTGTGGACTAGCCATTGCTTCTCTACGAGGCTCATACCAGGAGCTACGGTGCTGAAGTATGTAGCCCATGCCATACT
CCCAGGAAAAACTCAAACGACCTTCAACAAAAGGGTACCTATACCCGAAACTGACACAGGTGGGTAGGTAGAGAATACCTAGGGGTGCGAGACAACTCTC
TCTAAGGAACTCGGCAAAATGGCCCCGTAACTTCGGGAGAAGGGGTGCCCACTCGCAAAAGGAGGTCGCTGTGACCAGGCCCGGGCGACTGTTTACCAAA
AACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGAGCTGATGCCTGCCCAATGCTGGAAGGTCAAGGAAGTTGGTGAACTAATGATAGGGAAGCCG
GCGGCCAAAGCCCTGGTGAACGGCGGTCGTAACTATAACGGTCCTAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGACATTGGTCCTCGA
GTGCAAAGGTAGAAGGGAGCGAACAATTGA