Detailed information on CNT30676994


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001339, E-value = 1e-145

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381505Setaria viridisManihot esculenta31.0653.2687.74155forward
CNT30403504Setaria viridisBeta vulgaris35.6780.5489.33178reverse complement
CNT30709956Setaria viridisGlycine max53.1159.0287.92265forward
CNT3044711Setaria viridisPrunus dulcis75.9579.4589.45379reverse complement
CNT30385182Setaria viridisTriticum turgidum80.5699.7594.78402reverse complement
CNT30588765Setaria viridisMusa acuminata78.7656.391.6393reverse complement
CNT3087623Setaria viridisVigna radiata38.2891.8388.48191reverse complement
CNT30656195Setaria viridisTriticum dicoccoides18.6436.1998.9293reverse complement
CNT30266045Setaria viridisBrassica rapa27.4530.9397.08137forward
CNT30612440Setaria viridisArabis alpina46.49103.1187.5232forward
CNT30141326Setaria viridisLolium perenne33.0749.792.73165forward
CNT30369364Setaria viridisOryza glumipatula21.8426.294.5109forward
CNT3056240Setaria viridisAmborella trichopoda51.189.1690.2255forward

Expression of CNT30676994

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSRRLIGNGLVKGMEPTEAVLKASLHRVIVTAYGPKPR*

Sequence

>CNT30676994
ACCGTGAGGGAAAGGTGAAAAGAACCCCCAGTGGGTAGTGAAATAGAACATGAAACTGTGCTGAGCTCCCAAGCAGTGGGAGGGAAAAGTGATCTCTGAC
CGCGTGCGTGTTGAAGAATGAGCCGGCGACTCATAGGCAATGGCTTGGTTAAGGGAATGGAACCCACTGAAGCTGTATTGAAAGCGAGTCTTCATAGGGT
GATTGTCACTGCTTATGGACCCAAACCTAGGTGATCTATCCCTGACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAATTGACTGATGTTGAAG
AATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCTACTCGAACCCAGAGCGAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACAT
CTAGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGACATTGGTCCTCGAGTGCAAAGGTAGAAGGGAGCGAA