Detailed information on CNT30676981


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT000851, E-value = 2e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30638683Setaria viridisCapsicum annuum51.0462.0285.94320reverse complement
CNT3082954Setaria viridisBrassica juncea26.4814.0786.14166forward
CNT30609809Setaria viridisGossypium raimondii35.5752.4783.41223forward
CNT30206724Setaria viridisHelianthus annuus91.3926.4190.75573forward
CNT30364730Setaria viridisSorghum bicolor54.3960.1492.67341reverse complement
CNT30705531Setaria viridisPrunus avium43.2296.7987.45271reverse complement

Expression of CNT30676981

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MVRIQCPENPRFPPQGLSTEGESGPKIWPKGVVDGQQVNIPVLPLVAMEGWRRLG*

>peptide 2 (29 aa)
KGSVEAVGCQNASIGERSTLEGSKHESGG*

>peptide 3 (29 aa)
MPAQCWKVKEVGFLGPDGHWSSSAKVEGSE

>peptide 4 (32 aa)
MGADACPMLEGQGSWFPRARRTLVLECKGRRER

>peptide 5 (32 aa)
MSKCINRGAFHLRGKQTRKRGLTKWKRECRLE*

Sequence

>CNT30676981
CTAAGGGATCTGTCGAAGCTGTGGGATGTCAAAATGCATCAATAGGGGAGCGTTCCACCTTAGAGGGAAGCAAACACGAAAGCGGGGGTTGACGAAATGG
AAGAGAGAATGTCGGCTTGAGTAACGAAAACAATGGTGAGAATCCAATGCCCTGAAAATCCAAGGTTTCCTCCACAAGGTTTGTCCACAGAGGGTGAGTC
AGGGCCTAAGATCTGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACCCCTTGTTGCTATGGAGGGATGGAGGAGGCTAGGTTAG
CCGAAACATGGTTATAGGTTTAAGGACACAACGTGACCCTGCTTTTTCAGGGTAAGAAGGGGTAGAGAATACCTAGGGGTGCGAGACAACTCTCTCTAAG
GAACTCGGCAAAATGGCCCCGTAACTTCGGGAGAAGGGGTGCCCACTCGCAAAAGGAGGTCGCTGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACA
GGTCTCCGCAAAGTCGTAAGACCATGTATGGGAGCTGATGCCTGCCCAATGCTGGAAGGTCAAGGAAGTTGGTTTCCTCGGGCCAGACGGACATTGGTCC
TCGAGTGCAAAGGTAGAAGGGAGCGAA