Detailed information on CNT30676912


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 3e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30314796Setaria viridisCorylus avellana47.7834.584.39237forward
CNT30702585Setaria viridisQuercus lobata21.3745.8984.91106forward
CNT30381342Setaria viridisManihot esculenta31.4519.3185.26156forward
CNT30200362Setaria viridisPisum sativum17.7431.5484.0988forward
CNT30710572Setaria viridisGlycine max26.4129.3183.21131forward
CNT30223861Setaria viridisHordeum vulgare22.7819.8990.27113forward
CNT30541563Setaria viridisBrassica napus5037.1882.66248forward
CNT30237332Setaria viridisBrassica oleracea23.9949.5882.35119forward
CNT3075755Setaria viridisBrassica juncea5036.4282.66248forward
CNT30724556Setaria viridisLupinus angustifolius26.4113.2784.73131forward

Expression of CNT30676912

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MAFRDGRRDPSAEELEGVVGNLLRGGPVLALSTRGDHAGLEEDALEYHIVLSQVVEGLGPHLLCNLEAGTSLVVGCFA*

Sequence

>CNT30676912
ATCTGAACCTGTAATATGGCACACTGCCTACAGTGTGCCCTCGAGGTAGGTACTAGGCTACTAGCAGCGCGTATTAGTAGACGTAGTTCTTGACGAACAT
TCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGGAGGTGTTCTGAAGAGCCCTGGCGTAGGAGAAGGACACATGCCACGGGTTGGGGCTCTGGTTCATGGCG
TTCAGGGACGGCAGGAGGGATCCTTCTGCGGAGGAGCTTGAGGGTGTAGTCGGCAACTTGCTGAGGGGTGGCCCTGTCCTTGCACTCAGCACCAGGGGTG
ACCATGCTGGGCTTGAGGAGGATGCCCTCGAATATCACATTGTTCTCAGCCAGGTAGTAGAAGGTCTCGGCCCACACCTTCTGTGCAACCTCGAAGCGGG
CACCAGCCTGGTAGTAGGCTGCTTCGCGTGAAGCGAGGCCATCAAGACCTTGGCACCATGACTCGTTGTTGGAACCAGCAAGTGGCACAAGACCCT