« Back to Setaria viridis search


Detailed information on CNT30676875


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 2e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30632746Setaria viridisCapsicum annuum26.6423.6588.3171reverse complement

Expression of CNT30676875

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MSVKMRTTCTWTERPYEALLFTGIGFRPILRSLGGRQKKAPFPGWVASHQ*

>peptide 2 (63 aa)
MLLEPRASWFSPKCVEAQQLTGHLGVKHGFSAGYASGTKLRQTLNTRHVCEDEDYLHLDRKTL*

Sequence

>CNT30676875
CCATTCACCGTGAGGGAAAGCGAGTCTTCATAGGGTGATTGTCACTGCTTATGGACCCAAACCTAGGTGATCTATCCCTGACCAGGATGAAGCTTGGATG
AAACTAAGCAGAGGTCCGAATTGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCTACTCGAACCCAGAGCGAGCTGGTTCTCC
CCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACGGTTTCAGTGCGGGCTACGCGAGCGGTACCAAATTAAGGCAAACTCTGA
ATACTAGACATGTCTGTGAAGATGAGGACTACCTGCACCTGGACAGAAAGACCCTATGAAGCTTTACTGTTCACTGGGATTGGCTTTAGGCCTATCCTGC
GCAGCTTAGGTGGAAGACAAAAGAAGGCCCCCTTCCCAGGGTGGGTGGCGAGCCATCAGTGAGATATCACTCTGAAAGAGCTTGGATTCTAACCTTGTGT
CAGACCCGTGAGCCAAGGGACAGTCTTAGGTAGACAGTTTCTACAAGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGA
CGGACATTGGTCCTCGAGTGCAAAGGTAGAAGGGAGCGAACA