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Detailed information on CNT30676856


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 9e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374484Setaria viridisArabidopsis thaliana31.9649.4180210forward
CNT30381313Setaria viridisManihot esculenta32.8838.3780.56216forward
CNT30319836Setaria viridisAsparagus officinalis28.3123.3181.18186forward

Expression of CNT30676856

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MAFRGDHAGLEEDALEYHIVLSQVVEGLGPHLLCNLEGPLDAVLTVKKDFRLHNWHQAVVLAWTIGDADNSAPPGAWCPIRPSLEGKTT*

Sequence

>CNT30676856
ACCAGCATACCACAGGCCACATAAGGTAGTAACCATGTGAATGCGAACCTGCAGTACCAGCATACCGAGGATAGTAAAATCGCAGTGTACTCTTTGTCCC
ATCTGAACCTGTAATATGGCACACTGCCTACAGTGTGCCCTCGAGGTAGGTACTAGGCTACTAGCAGCGCGTATTAGTAGACGTAGTTCTTGACGAACAT
TCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGGAGGTGTTCTGAAGAGCCCTGGCGTAGGAGAAGGACACATGCCACGGGTTGGGGCTCTGGTTCATGGCG
TTCAGGGGTGACCATGCTGGGCTTGAGGAGGATGCCCTCGAATATCACATTGTTCTCAGCCAGGTAGTAGAAGGTCTCGGCCCACACCTTCTGTGCAACC
TCGAAGGTCCTCTCGATGCCGTGCTCACCGTCAAGAAGGATTTCAGGCTCCACAATTGGCACCAGGCCGTTGTCCTAGCATGGACCATTGGGGATGCTGA
TAACAGTGCGCCTCCTGGCGCGTGGTGCCCCATTCGGCCGTCTTTGGAAGGAAAGACGACTTGAGGAGAGTAGCAGATAACGCCATTGCTTCTGGTCCTG
AACACAAGGAGACAAGCACTATCCTTTCTTTGACACACAATCTTTCCTTAGGGGCTT